Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst9g02839 ATGCTCACGTGCATAGCACGTCCCAAGAAACACGGAGGCGACTCGCCGAGCGACGATCCGAGTTCGCGCGGGGCCAAGTCGCTAACGTGTCAGCTGAAAGAGATGGCGCTGAAGGCGTCGGGGGCGTACAAGCAGTGCGGGCCGTGCGCGCCGCCGCAGAGTCGACTGAGCCGCGGCAGCGGAGAGTCGGATTCGGAGTCGTCGCGGCGGCGGTGGGGGAAGGAGATGGAGGCGCGGCTGAAGGGGATATCGAGCGGCGAGGGGACGCCGAGCTCGAGTGGGAGGAGAGTGGTGGTGGTGCTGGCAGAGGAGGAGGAACCGAAGGAGTGGGTGGCGCAGGTGGAGCCAGGCGTTTTGATCACGTTCGTGTCGCTTCCCCGTGGCGGGAACCATCTCAAACGGATTCGGTTCAGTTTGGACCGTGATTGGAGTGTTGGTTGGTCCATGCTGGACCGAGTCTCTTTGATTCTGGCTAGTGCCCTACTGATTGTGACTGTGACAGTGGTTGTTTATCTTTTAGCTACCGGCGATTGTCCATTCCCTGGTAAACTGAATTATGGTTTATCTTTTATGTATAGTCGCGAGATATTTAACAAATGGCAAGCTCAAAGATGGTGGGCAGAGAACTACGACAAGGTCATGGAACTTTACAATGTTCAAAGGCTTAACCGCCAAGCTTTGCCTCTTCCAACCCCACCAAGGTCCGAAGACGAGAGTTCAAAGCGCGAATCAATAGAAGAGATCCCTGTGACACCTCCACTGAGTCGGGAAAGGCCACCTTGTAATTTTTACCGAGCAGGAGGAGGAGGGGTGGCAATGGGGTACTCATCCTCTGATTCGTTTGATCATCAGTCAATGCAATCCCGGCATTACTATGACCCGAGTGGCGTGAACTCAACCCCAAAGGTGTCCACCATTAGTGCTGCTGCCAAGACAGATATCTCATCAATGGATGCTGATGCTTCTATTAGAAGTAGCTCATCTAGAGAAGCTGATCGTTCTGGGGATCTTTCAATCAGCAATGCCAGTGACCTGGACGCTGAATGGGTTGAGCAGGATGAACCTGGGGTTTACATTACCATCAGAGCTCTCCCAGGTGGCAAAAGGGAGCTCAAACGAGTAAGGTTCAGTCGAGAAAAGTTTGGGGAGATTCATGCTAGACTGTGGTGGGAAGAGAACCGTGCCAGAATACATGAACTGTACTTGCGCGATCAGATGTTAGAACGAGTGCTACTTGGCACATTCCTTGACCCTAACACACTCGCTTTTGCAAAGTTTAGAAGAGGAGTGGGTGGCATCACGGAAGAAAGTTGTGTGGTTATTTCGCGGAAACGGATAAAACAACGCAACTGTGGGTCCCACCCCGAGTGCGGCACGTGTGGGAAACGGCGGTGA 1395 0.5355 MLTCIARPKKHGGDSPSDDPSSRGAKSLTCQLKEMALKASGAYKQCGPCAPPQSRLSRGSGESDSESSRRRWGKEMEARLKGISSGEGTPSSSGRRVVVVLAEEEEPKEWVAQVEPGVLITFVSLPRGGNHLKRIRFSLDRDWSVGWSMLDRVSLILASALLIVTVTVVVYLLATGDCPFPGKLNYGLSFMYSREIFNKWQAQRWWAENYDKVMELYNVQRLNRQALPLPTPPRSEDESSKRESIEEIPVTPPLSRERPPCNFYRAGGGGVAMGYSSSDSFDHQSMQSRHYYDPSGVNSTPKVSTISAAAKTDISSMDADASIRSSSSREADRSGDLSISNASDLDAEWVEQDEPGVYITIRALPGGKRELKRVRFSREKFGEIHARLWWEENRARIHELYLRDQMLERVLLGTFLDPNTLAFAKFRRGVGGITEESCVVISRKRIKQRNCGSHPECGTCGKRR 464
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst9g02839 464 ProSiteProfiles BRX domain profile. 347 402 IPR013591 -
Spst9g02839 464 PANTHER PROTEIN BREVIS RADIX-LIKE 1 1 402 IPR044532 -
Spst9g02839 464 MobiDBLite consensus disorder prediction 317 337 - -
Spst9g02839 464 ProSiteProfiles BRX domain profile. 108 218 IPR013591 -
Spst9g02839 464 MobiDBLite consensus disorder prediction 48 74 - -
Spst9g02839 464 Pfam Transcription factor BRX N-terminal domain 26 49 IPR027988 -
Spst9g02839 464 MobiDBLite consensus disorder prediction 227 259 - -
Spst9g02839 464 MobiDBLite consensus disorder prediction 1 28 - -
Spst9g02839 464 MobiDBLite consensus disorder prediction 281 301 - -
Spst9g02839 464 Pfam Transcription factor regulating root and shoot growth via Pin3 108 138 IPR013591 -
Spst9g02839 464 Pfam Transcription factor regulating root and shoot growth via Pin3 347 401 IPR013591 -
Spst9g02839 464 Pfam Transcription factor regulating root and shoot growth via Pin3 192 217 IPR013591 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst9g02839 Spst-Chr9 62589820 62599471 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst9g02839 1 402 Major Intrinsic Protein MIP AT1G31880 36.508 4.14e-65 212
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst9g02839 - - pvu:PHAVU_009G229100g 550.051
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst9g02839 9 62589820 62599471 Spst9g02839 9 62589820 62599471 ECH
Spst3g03371 3 83414865 83419774 Spst9g02839 9 62589820 62599471 PCT