Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst9g02837 ATGGGTGATGTTCTAAGCCCCTTCACAGTCTCAACCCCTCCTCCACCCTCCTCCTCTTCCGCCAAGAACAACACCATGCCCATGCTGTACTACGGTCTTGTCGTGGTGGGAACCGCCGCCATAGTGCTGGCCATATACAACCTCGTCCTCCTCAGACGCAGCCACGCGCGGTCGCAGCCTTCGGGGTCGGGTACCAATCGTTCGGGAACAACAACAACAACAACGGAAGCGGTTTCGGAAATAACGAGGAACTTGGACAACCATCAAAGACACTTGCTTTCGAGCTTCAAGTACAAGAAAGAAGTGGTGGCAAAAGAAGAAGAAGAAGAAGAAGAAGAAAAAGAAAAAGAAGAAGAAGGGTTCGATGATTTTGAGTGCCCCGTTTGCTTATCGGTTTACGAAGAAGGGGAAGAAGTGAGGAAGCTTCCACAGTGCAAACACTATTTCCACGTTGTTTGTATAGACATGTGGCTCTACTCGCACTTCGATTGCCCCATTTGTCGAACACCCGTTGTCGGGCCTCCATGTCCGGTGGAGAATTCCATTGATGGGTTCATGGAATCTGGTCGCATCTCAGTTCAGATATAA 588 0.4983 MGDVLSPFTVSTPPPPSSSSAKNNTMPMLYYGLVVVGTAAIVLAIYNLVLLRRSHARSQPSGSGTNRSGTTTTTTEAVSEITRNLDNHQRHLLSSFKYKKEVVAKEEEEEEEEKEKEEEGFDDFECPVCLSVYEEGEEVRKLPQCKHYFHVVCIDMWLYSHFDCPICRTPVVGPPCPVENSIDGFMESGRISVQI 195
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst9g02837 195 Pfam Ring finger domain 125 168 IPR001841 -
Spst9g02837 195 SUPERFAMILY RING/U-box 115 173 - -
Spst9g02837 195 Coils Coil 98 120 - -
Spst9g02837 195 CDD RING-H2_EL5-like 125 168 - -
Spst9g02837 195 ProSiteProfiles Zinc finger RING-type profile. 126 168 IPR001841 -
Spst9g02837 195 FunFam RING-H2 finger protein ATL1 72 173 - -
Spst9g02837 195 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 19 172 IPR044675 -
Spst9g02837 195 MobiDBLite consensus disorder prediction 1 23 - -
Spst9g02837 195 MobiDBLite consensus disorder prediction 56 77 - -
Spst9g02837 195 SMART ring_2 126 167 IPR001841 -
Spst9g02837 195 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 95 173 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst9g02837 Spst-Chr9 62581999 62582586 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst9g02837 15 171 C3H Transcription Factor Family AT1G04360 31.250 2.81e-19 82.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst9g02837 - - gmx:102668279 212.231
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst3g03368 3 83383536 83384312 Spst9g02837 9 62581999 62582586 PCT