Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst9g02828 ATGGCTGGAATGTCAAAGGAGGGAGTGGTGGGTAGTCCTAGATGGGGTTCTACAATTATTATGCAAACACCAGAGGATGTGTCCAGAGCTGTTGCTGCGGCTGCAACTTCTCCAAGGCCCTCTGTTGTATATTCATCAAAAAATGATCACGGTGGCAGTCAACTTCAAAGGCTGCAGTATCAAGTTACAAAAATGATAAAAGGACTTTCTCGCCCGTCTGAAGTTCAATATACTAATTACAATCCAGAGATCCTGACAACTCAGAAGCGTCAATGGGCTGCAAACATTCAGTTACAGTACATGGACCATAGGTCATTGAAGGAGCCTACGAAACTGTTTGAAAGCATGGTGGTTGTGGGACTTCATCCTAATTGTGATATTCAGGCACTGCAAAGGCAATATGTCTTAAGAAAGTCTGAAGGCCCTGGTAAATTGAGAAGTGCTCTTGGTTATCCGAATCAATCCCGTGTGGAACCCAATCTAGAACCTCAGGTCTTATTTGTGTACCCTCCTGAAAGACAGCTGCCTCTTAAAGACAGGGATCTTCTCTCTTTCTGCTTCCCTGGAGGCTTGGAGGTTAATGCCGTTGAGAGAACCCCTTCCATGAGTGAGTTGAATGAAATTCTTTTTGGGCAGGAACACCTCCAACAAAGGGATCTGTCCTTTGTATTTAGGCTACAGGGTGCTGATAATTCAACTCTTTATGGGTGCTGTGTCTTAGTTGAAGAGTTAGTGCAAAAGCCCTCTGGATTGGTCTCCCTGATTCCAGATAAACAGTCGACTTATTCTTCTTTGAAACGACATATATTAACCACACAAAGATGTTACTGCATTCTCTCAAGGCTCCCATTCTTTGAATTGCACTTTGGGGTATTGAACAGCATCTTCATGCAAGAACGGCTAGATCGGTTGACGAAAAACATTGGAGATTTAAATTTTGAATATGTTAAAGGTAGCTGTGAGGAACAGAATTTGGGGGAAGATTCAGAGTGCTTGTTGGAGAATGATAAATTAGAAGAGAGACATGATGACAATGCAATGATTTCTATATCAAGCCTAAGAAATTCCTCAGATGAAAACATTGAGGATGATAGTAATTATCCCAAGAAACAAATGGTTAACGGGGAGCTGCATACATTTAATGACAGAGTCAGTGATGATAATGCTGTGCCTTGTGATCCTGAAACTGATAGAAAAACTTTAAAAGAAGAATCTGGTCTCACAAATGCTGTTGATAGTGATTTGTATGGAGATGCTTTTGTTTCAAACAAACAGTCAGAAGAGAGGCGATTACCCAATGCTATTCTTCCACTCTTGCGCTATTGCCAGTATGAAAGCTCTGAATCTTCCTGCAGTTTTCAGGGTTCTCCATGCGATGACAGAAATTTTAGGAGCGACGTCGATGATACTGAGACAGAAGATGCTTCATTCTCTGGCCAAGATGATTTAAATGATCGAAATGATATTCTTGAATGGGCTAAGGCAAATAATTGTGGGCCATTACAAATTATAAGTGAGTATTATTGCTTAAATTGCCCTGTAAGAGGCTCATCACTTAGGTTTCATCCTTTGGAGCACCTGCATCCCTTAGAATATCACAGACCAGATGAGGCAATTTTACATCTTGCTGGTTCAATTGTTGACTTGAAATCTTTCAGTACAGGTCTGGAATTAGCAGAGGCACATAATTCTCTTCTGGCTGAGGAGGAGGCAACTGCATTATCTATATGGGCTGTAGCATGCATATGTGGTACGTTGAGACTTGAAAATGTGTTAACATTCTTTGCTGGAGCTCTACTGGAAAAGCAGATAGTTTTTGTCTGTTCTAATTTGCTGTACTGTGCTGTTGACCCAATGATGGGGAATCCTATCTGCATCAGTTTTGTCAGTTATTTCACTAATCCGACCCTACCAATGGCAAAGCTTGCTAATGCCGGTTTGGTTTTACCAAATGACATGCTTGAGTTTCTGGATGCACCCGTTCCTTACATAGTTGGTATCAAAACCAAGACCAATGAAGTTCAGTCAAAGTTAACTAATAATGTTATCATGGTTGACGCCAACAGAAATCAGATTTGCTGTTGCCTTGAAAATGGTTGGGTCATGGCTTCTCAAGTGAAGTCATCAACAATACCTCAACTGCCCAGGCAGAAAGAGTTAATCTCTTCTTTACGTCCTTATCATGCAACTCTTGTGGGAGAAAATTACTTGGGTAGGAGAAGGCCAGTGTATGAATGCACAGAAGTGCAGGTAGATGCTGCCAAGGGGTTCTTATCGGTGTTAAGGTCTTATTTGGATTCCCTTTGCCATAACATTCGTTCTCATACAATAACCAATGTACAATCCAATGACGATAAGGTATCCTTGCTTTTGAAGGAGAGTTTTATCGACTCATTTCCTTATCGTGATCGGCCATTCATGAAGGCGATGACAACTCTCTATCTATTGGCATCAGGCCAAGTCGGGTTGTTGAAGGGTTTCACCAAAATATTGAGATTCATGTGGAACCTTTACCATGTGGCTGTGGAGTGTCTTATACACTTAAAACATATGGGTGATGTTGCTACTTGTCACCTGGATTCCATGAAAATTGATGATGCCCTACTTGGCATTCCCATTGCAAGTTGGGGAAATGATCACTATTCAAGAAGCATTGAGATTGAGATTAGTGTAGGGTGTGTGGACCAAGTGGAAGATGCAGAGTTTATGGATTTCCGTAGATGTGTCAGAGACAAGAGCTGCCAGAGAGACAGCTTAGCTGCACAAGCAGCAGCAGCAGTAGCATCAGACTCAGAGAGCTTGATGATGAATGGAAGGAACAGGTTCCCCTTCACCCCATCACAGTGGCAAGAGCTTGAACATCAAGCTCTCATATACAAGTACATGGCTTCAGGGATTTCCATTCCACCTGATCTTCTCTTCACCATAAAAAGGAGCTACTTTGATTCCCCTCTGTCCTCGAGGCTTTTGCCTAACCAGCCACAGCACTTTGGATGGAACTACCTGCAGATGGGTTTGGGGAGAAAAATAGACCCTGAGCCAGGTAGGTGTAGAAGAACTGATGGCAAGAAATGGAGGTGCTCCAAAGAGGCATACCCAGATTCAAAGTACTGTGAGAGGCACATGCACAGAGGGAAAAATCGTTCAAGAAAGCCTGTGGAAGTTTTGAAAACAACACCAACAACAAACACAAACACAAATGCTTCGACACAACAACCAATCTCATCAATCACCAAACTTAATACTACCAATACTCTTTCACCTCTTGCATCATCTGAAGCACACCAACACCACCCTCAACACTATGGCTCCTTTCTCTATCACCACCCTCCGTCAAGGTCCTCTGGCATTGGCTTGTCCTTTGAAGACAACAGTGCTCCTTTGTTTCTTGACAATGGCTCTTGCTCTCAGTCCAACACAGATTGCAGGAGTAGGTATCTTTATGGAGAGAAAGAGGAGGTGGATGAACATGCTTTCTTCACAGAGCCATGTGGTATCATGAAAACCTTTTCTGCTTCCTCTATGGATGATTCTTGGCAACTCACACCATTGACTATGAGCTCCTCTTCTTCCGCCAAACAGAGGAGTTCCTTTGGCTTGTCCAATGATTACTCTTGCTTGCAACTTCAGAGCCACTCAAAGCAGCAAGAGCAACAAGATCAGGGTGGTTGCTACATGCTAGGTGGAGGCCAACTTGGAAAAGAAGAACCTCAGAAAACCGTTCATCGCTTCTTTGATGAATGGCCCCACAAAGGAAGACAAGGATCTTGGCTTGATTTGGATGACAAATCTTCAACAACTCAACTTTCAATTTCCATTCCTACCTCTGCTCATGATTTTCCAGCCTTCAGTTCCAGAACCCACCATGGTAATTGCTAA 3879 0.4269 MAGMSKEGVVGSPRWGSTIIMQTPEDVSRAVAAAATSPRPSVVYSSKNDHGGSQLQRLQYQVTKMIKGLSRPSEVQYTNYNPEILTTQKRQWAANIQLQYMDHRSLKEPTKLFESMVVVGLHPNCDIQALQRQYVLRKSEGPGKLRSALGYPNQSRVEPNLEPQVLFVYPPERQLPLKDRDLLSFCFPGGLEVNAVERTPSMSELNEILFGQEHLQQRDLSFVFRLQGADNSTLYGCCVLVEELVQKPSGLVSLIPDKQSTYSSLKRHILTTQRCYCILSRLPFFELHFGVLNSIFMQERLDRLTKNIGDLNFEYVKGSCEEQNLGEDSECLLENDKLEERHDDNAMISISSLRNSSDENIEDDSNYPKKQMVNGELHTFNDRVSDDNAVPCDPETDRKTLKEESGLTNAVDSDLYGDAFVSNKQSEERRLPNAILPLLRYCQYESSESSCSFQGSPCDDRNFRSDVDDTETEDASFSGQDDLNDRNDILEWAKANNCGPLQIISEYYCLNCPVRGSSLRFHPLEHLHPLEYHRPDEAILHLAGSIVDLKSFSTGLELAEAHNSLLAEEEATALSIWAVACICGTLRLENVLTFFAGALLEKQIVFVCSNLLYCAVDPMMGNPICISFVSYFTNPTLPMAKLANAGLVLPNDMLEFLDAPVPYIVGIKTKTNEVQSKLTNNVIMVDANRNQICCCLENGWVMASQVKSSTIPQLPRQKELISSLRPYHATLVGENYLGRRRPVYECTEVQVDAAKGFLSVLRSYLDSLCHNIRSHTITNVQSNDDKVSLLLKESFIDSFPYRDRPFMKAMTTLYLLASGQVGLLKGFTKILRFMWNLYHVAVECLIHLKHMGDVATCHLDSMKIDDALLGIPIASWGNDHYSRSIEIEISVGCVDQVEDAEFMDFRRCVRDKSCQRDSLAAQAAAAVASDSESLMMNGRNRFPFTPSQWQELEHQALIYKYMASGISIPPDLLFTIKRSYFDSPLSSRLLPNQPQHFGWNYLQMGLGRKIDPEPGRCRRTDGKKWRCSKEAYPDSKYCERHMHRGKNRSRKPVEVLKTTPTTNTNTNASTQQPISSITKLNTTNTLSPLASSEAHQHHPQHYGSFLYHHPPSRSSGIGLSFEDNSAPLFLDNGSCSQSNTDCRSRYLYGEKEEVDEHAFFTEPCGIMKTFSASSMDDSWQLTPLTMSSSSSAKQRSSFGLSNDYSCLQLQSHSKQQEQQDQGGCYMLGGGQLGKEEPQKTVHRFFDEWPHKGRQGSWLDLDDKSSTTQLSISIPTSAHDFPAFSSRTHHGNC 1292
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst9g02828 1292 Gene3D - 575 766 IPR043153 -
Spst9g02828 1292 MobiDBLite consensus disorder prediction 1089 1109 - -
Spst9g02828 1292 MobiDBLite consensus disorder prediction 1054 1077 - -
Spst9g02828 1292 Pfam QLQ 943 976 IPR014978 GO:0005524|GO:0005634|GO:0006355
Spst9g02828 1292 ProSiteProfiles WRC domain profile. 1011 1055 IPR014977 -
Spst9g02828 1292 PANTHER DENN DOMAIN-CONTAINING PROTEIN 2 41 611 - -
Spst9g02828 1292 SMART uDENN_cls 109 242 IPR005113 -
Spst9g02828 1292 MobiDBLite consensus disorder prediction 1041 1077 - -
Spst9g02828 1292 ProSiteProfiles QLQ domain profile. 943 978 IPR014978 GO:0005524|GO:0005634|GO:0006355
Spst9g02828 1292 Pfam WRC 1012 1054 IPR014977 -
Spst9g02828 1292 Pfam uDENN domain 163 240 IPR005113 -
Spst9g02828 1292 Pfam DENN (AEX-3) domain 648 688 IPR001194 -
Spst9g02828 1292 SMART DENN_cls 271 690 IPR001194 -
Spst9g02828 1292 SMART QLQ_2 942 978 IPR014978 GO:0005524|GO:0005634|GO:0006355
Spst9g02828 1292 Gene3D - 100 309 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst9g02828 Spst-Chr9 62494195 62515221 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst9g02828 941 1054 GRF Transcription Factor Family AT3G13960 71.053 8.66e-51 183
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRF Spst9g02828 uDENN 1.5e-09 CL0431
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst9g02828 - - gmx:100782148 1310.43
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst9g02828 9 62494195 62515221 Spst9g02828 9 62494195 62515221 ECH
Spst3g02744 3 77022427 77024237 Spst9g02828 9 62494195 62515221 PCT