Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst9g02801 ATGGTGAAGCCCAGTAGCTTGGAAAAACCAGCAGAGGAGCAAAGCAATACATCGTACAGAGGAGTTCGGAAGAGGAAGTGGGGAAAATATGTGTCGGAAATTAGGCTTCCCAACAGCCGTCAAAGGATTTGGTTGGGTTCCTACGACAGCGCCGAGAAGGCGGCGCGGGCTTTCGACGCCGCCATGTTCTGCTTACGTGGCAGTGGCGCCAAATTTAACTTCCCGACTGACCCGCCCAACATTGCCGGCGGGAGGACCATGACCCCCTCTCAGATTCAGATCGCCGCCGCACGCTTCGCCAATTCGGAGCCTCAGACAGAGTGTTCGGGTCATCAACACGTGGAGTCTTCAGCTTCCGACGAAGAGACCATGTCGTTGCAGTTGGAGTCGGCGTCTCCTCCTCTCTCCGACGTGACGTTTCCGAACGACGCCGGATTCCTAAGCGGGTCGATGCCGGACCCGTTTCCAGAACTCGGTTCGGTCAATTTCACACCCGAGTTCTCTGATTTTCCGAGTTTCGACGATTTCAGCCGCGATTTCTTCCTGCCGGAGTTTCCGAGCTTCGATTACGGGGAGGAAAACTTGGACGGGTTGTTAATTCAGGACTCGTTCTTGTGGAGTTTCTAA 627 0.5486 MVKPSSLEKPAEEQSNTSYRGVRKRKWGKYVSEIRLPNSRQRIWLGSYDSAEKAARAFDAAMFCLRGSGAKFNFPTDPPNIAGGRTMTPSQIQIAAARFANSEPQTECSGHQHVESSASDEETMSLQLESASPPLSDVTFPNDAGFLSGSMPDPFPELGSVNFTPEFSDFPSFDDFSRDFFLPEFPSFDYGEENLDGLLIQDSFLWSF 208
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst9g02801 208 SMART rav1_2 18 81 IPR001471 GO:0003700|GO:0006355
Spst9g02801 208 ProSiteProfiles AP2/ERF domain profile. 18 75 IPR001471 GO:0003700|GO:0006355
Spst9g02801 208 Gene3D AP2/ERF domain 18 77 IPR036955 GO:0003700|GO:0006355
Spst9g02801 208 CDD AP2 19 77 IPR001471 GO:0003700|GO:0006355
Spst9g02801 208 PRINTS Ethylene responsive element binding protein signature 41 57 IPR001471 GO:0003700|GO:0006355
Spst9g02801 208 PRINTS Ethylene responsive element binding protein signature 19 30 IPR001471 GO:0003700|GO:0006355
Spst9g02801 208 FunFam Ethylene-responsive transcription factor 2 17 76 - -
Spst9g02801 208 SUPERFAMILY DNA-binding domain 18 76 IPR016177 GO:0003677
Spst9g02801 208 Pfam AP2 domain 18 67 IPR001471 GO:0003700|GO:0006355
Spst9g02801 208 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 11 124 - -
Spst9g02801 208 MobiDBLite consensus disorder prediction 1 24 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst9g02801 Spst-Chr9 62258303 62258929 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst9g02801 17 208 AP2-EREBP Transcription Factor Family AT1G19210 51.741 1.25e-53 168
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Spst9g02801 AP2 2.2e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst9g02801 - - gmx:100802508 301.597