Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst9g02800 ATGGCCAGCGCTCAGCTCACAGCAATAGCGTCTTCAGTCTCTACAACCTCGTTTGAAAGGCTTCGGCCTTCTGCGTTTCAGACGGGCCGTGTGAGGATTGGGAATCTCCCCCAAAGGTCCTTCCGGGGTTTGGTTGTCAAAGCAGCCACTGTTGTTGCTCCTAAGTACACTGCAGTGAAGCCTCTGGGTGACAGAGTACTGATAAAAGTTAAGGAAGCGGAGGAGAAAACTGAGGGTGGGATTTTACTTCCCTCAACTGCTCAGACGAAGCCTCAAGGGGGTGAAGTGGTTGCTGTTGGTGAAGGAAAGACAGTTGGGAAGAAGAATGTGGATGTTAGTGTGAAGACTGGTGCGCAAGTTGTGTATTCAAAATACGCTGGTACTGAGGTGGAATTCAATGGTACAAAGCATCTTATTGTGAAGGATGATGACATTGTTGGTATTCTAGAAACTGATGACATCAAGGATCTTAAACCCTTGAATGATAGAGTCCTCATAAAGGTTGCTGAAGCTGAGGAAAAAACTGCTGGTGGTTTGTTGCTTACAGAGGCAACGAAGGAGAAACCTTCGATTGGGACAGTTATAGCAGTTGGTCCAGGGCATTTGGACGAGGAAGGCAACAGAAAACCATTGTCAGTGACTCCAGGAAACACAGTTTTGTACTCCAAATATGCTGGAAATGATTTTAAGGGCAAAGATGGTGACTATATTACCTTGAGGGTCTCAGATGTCATGGCTGTCCTCTCCTAG 750 0.4653 MASAQLTAIASSVSTTSFERLRPSAFQTGRVRIGNLPQRSFRGLVVKAATVVAPKYTAVKPLGDRVLIKVKEAEEKTEGGILLPSTAQTKPQGGEVVAVGEGKTVGKKNVDVSVKTGAQVVYSKYAGTEVEFNGTKHLIVKDDDIVGILETDDIKDLKPLNDRVLIKVAEAEEKTAGGLLLTEATKEKPSIGTVIAVGPGHLDEEGNRKPLSVTPGNTVLYSKYAGNDFKGKDGDYITLRVSDVMAVLS 249
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst9g02800 249 PIRSF Cpn21 1 249 IPR017416 GO:0006457|GO:0046914|GO:1901671
Spst9g02800 249 CDD cpn10 59 149 IPR020818 GO:0005524|GO:0006457|GO:0044183
Spst9g02800 249 Hamap Co-chaperonin GroES [groES]. 156 249 IPR020818 GO:0005524|GO:0006457|GO:0044183
Spst9g02800 249 SMART Cpn10_2 156 248 IPR020818 GO:0005524|GO:0006457|GO:0044183
Spst9g02800 249 SMART Cpn10_2 58 149 IPR020818 GO:0005524|GO:0006457|GO:0044183
Spst9g02800 249 Pfam Chaperonin 10 Kd subunit 157 247 IPR020818 GO:0005524|GO:0006457|GO:0044183
Spst9g02800 249 Pfam Chaperonin 10 Kd subunit 59 148 IPR020818 GO:0005524|GO:0006457|GO:0044183
Spst9g02800 249 ProSitePatterns Chaperonins cpn10 signature. 157 181 IPR018369 GO:0005524|GO:0006457
Spst9g02800 249 Gene3D GroES chaperonin 51 151 IPR037124 GO:0006457
Spst9g02800 249 Gene3D GroES chaperonin 152 249 IPR037124 GO:0006457
Spst9g02800 249 SUPERFAMILY GroES-like 155 248 IPR011032 -
Spst9g02800 249 PRINTS 10kDa chaperonin signature 81 102 IPR020818 GO:0005524|GO:0006457|GO:0044183
Spst9g02800 249 PRINTS 10kDa chaperonin signature 136 149 IPR020818 GO:0005524|GO:0006457|GO:0044183
Spst9g02800 249 PRINTS 10kDa chaperonin signature 59 74 IPR020818 GO:0005524|GO:0006457|GO:0044183
Spst9g02800 249 PRINTS 10kDa chaperonin signature 115 127 IPR020818 GO:0005524|GO:0006457|GO:0044183
Spst9g02800 249 ProSitePatterns Chaperonins cpn10 signature. 59 83 IPR018369 GO:0005524|GO:0006457
Spst9g02800 249 FunFam 10 kDa chaperonin 155 249 - -
Spst9g02800 249 PANTHER 10 KDA HEAT SHOCK PROTEIN 155 247 IPR020818 GO:0005524|GO:0006457|GO:0044183
Spst9g02800 249 Hamap Co-chaperonin GroES [groES]. 58 150 IPR020818 GO:0005524|GO:0006457|GO:0044183
Spst9g02800 249 CDD cpn10 157 248 IPR020818 GO:0005524|GO:0006457|GO:0044183
Spst9g02800 249 FunFam 20 kDa chaperonin, chloroplastic 52 151 - -
Spst9g02800 249 SUPERFAMILY GroES-like 57 150 IPR011032 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst9g02800 Spst-Chr9 62239766 62242350 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst9g02800 1 249 Calmodulin-binding Proteins AT5G20720 73.913 2.41e-130 367
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst9g02800 9 62239766 62242350 Spst9g02800 9 62239766 62242350 ECH
Spst3g02782 3 77382527 77384432 Spst9g02800 9 62239766 62242350 PCT