Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst9g02799 ATGCAAAATTTGAGTGGAATCCCATCTGATTTCTCGGCGACAAATGCTGCTGATGAGTGTGGTGCCTTGAAGAATTCCATTGAGTCCTTGGATGTTGTTGGAGGGAATTCAGAAAGTGGAGGCTTTGTGTTGAGGTTCTGCTTGTTGTGGAATTTGAAACTTGTGGGGTTGAAGGCAACAATTAGAGGCATTTCTGGGGAAAGGGTTGGAGTTAGAATTGTTGTGGTAATGAAGGCTCCTCCAAATGGCTACATGCCTAATTCTGGCGAAGGGGAGAGGAAGACCATCAATTCAGAGTTATGGCATGCTTGTGCTGGACCATTGGTTTCCTTACCTCCTGTTGGAAGTCTTGTGGTTTACTTTCCTCAAGGACACAGTGAGCAAGTTGCAGCATCCATGCAAAAGGAGGCTGATTTCGTTCCCAGTTACCCTAACCTTCCATCGAAGTTGATTTGCATGCTTCACAATGTTGCTCTTCACGCTGATCCTGAAACGGATGAGGTCTATGCGCAGATGACACTTCAACCTGTTAATAAATATGACAAGGAAGCATTAGTGGCATCTGACATGGGTCTCAAACAAAACCAACAACCTACTGAGTTCTTTTGCAAAACTCTTACAGCTAGTGATACAAGCACTCATGGTGGATTTTCTGTGCCCCGTAGGGCAGCTGAGAAAATATTCCCGCCTCTGGATTTTTCAATGCAACCTCCAGCTCAGGAGATTGTTTCCAAAGATTTGCATGACAGTACATGGATATTTAGACATATTTATCGCGGACAGCCAAAGAGGCATCTATTGACGACCGGTTGGAGTGTCTTTGTTAGCACAAAAAGGTTGTTTGCTGGAGATTCAGTTCTTTTTATCAGGGATGAAAAACAACAACTTCTTTTAGGTATAAAGAGAGCTAACAGACAGCAGCCAGCACTATCTTCATCAGTAATATCCAGTGACAGCATGCATATTGGCATTCTTGCTGCTGCAGCTCATGCTGCTTCAAATAACAGCCCATTTACTATATTTTATAATCCAAGGGCCAGCCCCTCTGAATTTGTAATTCCATTAGCTAAGTATAATAAAGCCCTCTACAATCAAGTTTCCCTTGGAATGAGATTCAGAATGATGTTTGAGACCGAGGAGTCAGGTGTACGCAGATATATGGGTACAATCACTGGGATAAGTGACTTGGATCCTGTCAGATGGAAGAATTCACAGTGGCGCAATCTACAGGTTGGATGGGATGAATCAACGGCTGGTGAGCGCCCAAGCAGAGTTTCAATTTGGGATATTGAACCAGTAGTGACTCCTTTCTACATTTGTCCACCTCCATTTTTTAGGCCAAAGTTCCCCAAGCAACCAGGAATGCCAGATGATGAGTCTGATATAGAAAATGCTTTCAAGAGAGCTATGCCCTGGCTTGGAGATGACCTTGGAATGAAGGACGCCTCGAGTTCAATCTTTCCTGGTTTGAGTTTGGTGCAATGGATGAGCATGCAGCAGAATAATCAGTTGTCCGCTGCCCAATCAGGATTTATACCCCCATCCATGCTTTCATCCAATACACTGCATGGTAACCTTCCCACTGATGATCCATCCAAATTATTGAACTTTCAAGCTCCTGTCCTCTCTGCACCAAATCTACCATTTAACAAACCAAATTTACCAAACCAAGTCAACCAATTGCAACAATCCCCAACGTCATGGCCTCCTCAGCAGCAGCAACAGCAGAAGCTTCCATCATTAATGCAAACACCCTTAAATTCCCTCCAACAGCAGCAACAGAGGCAACAACAGCAGCCTGTACTGCAAAACCTGTCACAACCACAGCAACAACAGCCCCAAATGCCTCAACAGAGAGCACAAATGCCACAACAACAGCAGCAGCAGTCATGTCAACAGACCATCATGAATAGTGGGGCAATTGCTTCTAACCAGATTCCAAATCAGTGTGTGCAGCAACCAGTGACATACTCCCAGCTTCAGCAACAGCAGTTACTCTCAGGAACTCTCCCACCCCAACAAAGTTTTCAATCGCCCAATAAGAATACATTGCTGATGACATCCTTACCACAAGACTCACAGTTTCAGCAACAAATAGACCAGCAAGCTAGTCTCGTACAGAGGCAGCAACAACAACAGACACAGTTGCAATCATCTCCATTGCAGTTGTTGCAACAAAGCCTGTCACAGAGGGCACCACAGCAACCACAAATGACTCAAATGTCACAGCAAAACAGCTCAGAGCAGCAACCACAGTTGCAGTTGCTACAGAAATTGCAGCAACAACAGCAGCAGCAACAGCAACTCCTTTCCACTTCTAGTCCACTTTTGCAGTCTCAGCTTCTACAACAACAAAATACTCATCAACAAAACCAACACTTACCGCAGCTACCTTTATCACAATGTCATCAACCTCAGCAGCTTGGCAATAATGCTTTCTCAATGGAGAAGCTTTTCAATGGCAACAACTACTCTTCTTCGTCTCTGATGCAAACACAGCAGCTTCCTGTGAACCAACCTCATAATACACAGAAATCATTAACTAATACTAGAGCTCCTTCAACTCTTACAGAAGGAGATGCCCCATCATGCTCAACTTCACCATCTACTAATAACTGCCAGATATCTCCTTCAAATTTGATGAAAAGAAATCAACAGGTGCCAACCACATTAGGAGGACCTTCAGTAGTTGAACCCACCAATCATTTGATGCAGGAGCTTCATAGCAAGTCTGAGATGCAGATCAAACACGAATTACCCAGTGTAAGAGGACCTGACCAGATGAAGTACAAAGGGACAATTGCTGACCAGATGGAAGCTTCTTCTGGAACATCTTACTGTATTGATCCTAATAATATCCCCCAGAACTTCCCACTTCCCAGTTTCTGCATGGATGGGGATGTTCAATCACACCCAAGAAATAATCTTCCATTTGCCTCTAATCTTGATGGATTAACGCCAGATACTTTACTCTCAAGAGGGTATGATTCTCAAAAAGATCTTCAAAACTTGCTGTCTAATTATGGTGGTGCTCCAAGAGACATTGAAACTGAGCTGTCCACTGCTGCCATTAGTTCACAGCCATTTGGGGTGCCAGACATGCCTTTTAAGCCTGGATGCTCCAGTGATATTGCCATCAATGATCCTGGGGTTTTGAATAATGGCTTGTGGGCTAATCAGACTCAAAGAATGCGAACATATACTAAGGTTCAAAAATGTGGCTCTGTTGGAAGATGTATTGATGTCACCCGTTACAAGGGATATGATGAACTCCGACATGATTTGGCTCGGATGTTTGGGATTGAAGGGCAGCTAGAAGATCCTCAAAGGACAGAGTGGAAACTAGTCTACGTAGATCATGAAAACGACATTCTTCTTGTTGGTGATGACCCTTGGGAAGAATTTGTAAGCTGTGTCCAGAGCATAAAGATATTGTCATCTGCTGAGGTACAGCAAATGAGCTTGGATGGAGATTTAGGTCATATTCCAGTCCCCAATCAAGCTTGTAGTGGGACAGACAATGGCAATGCATGGAGGGGACAGTATGATGATAACTCTGCAGCCTCGTTTAATCGATAA 3579 0.4389 MQNLSGIPSDFSATNAADECGALKNSIESLDVVGGNSESGGFVLRFCLLWNLKLVGLKATIRGISGERVGVRIVVVMKAPPNGYMPNSGEGERKTINSELWHACAGPLVSLPPVGSLVVYFPQGHSEQVAASMQKEADFVPSYPNLPSKLICMLHNVALHADPETDEVYAQMTLQPVNKYDKEALVASDMGLKQNQQPTEFFCKTLTASDTSTHGGFSVPRRAAEKIFPPLDFSMQPPAQEIVSKDLHDSTWIFRHIYRGQPKRHLLTTGWSVFVSTKRLFAGDSVLFIRDEKQQLLLGIKRANRQQPALSSSVISSDSMHIGILAAAAHAASNNSPFTIFYNPRASPSEFVIPLAKYNKALYNQVSLGMRFRMMFETEESGVRRYMGTITGISDLDPVRWKNSQWRNLQVGWDESTAGERPSRVSIWDIEPVVTPFYICPPPFFRPKFPKQPGMPDDESDIENAFKRAMPWLGDDLGMKDASSSIFPGLSLVQWMSMQQNNQLSAAQSGFIPPSMLSSNTLHGNLPTDDPSKLLNFQAPVLSAPNLPFNKPNLPNQVNQLQQSPTSWPPQQQQQQKLPSLMQTPLNSLQQQQQRQQQQPVLQNLSQPQQQQPQMPQQRAQMPQQQQQQSCQQTIMNSGAIASNQIPNQCVQQPVTYSQLQQQQLLSGTLPPQQSFQSPNKNTLLMTSLPQDSQFQQQIDQQASLVQRQQQQQTQLQSSPLQLLQQSLSQRAPQQPQMTQMSQQNSSEQQPQLQLLQKLQQQQQQQQQLLSTSSPLLQSQLLQQQNTHQQNQHLPQLPLSQCHQPQQLGNNAFSMEKLFNGNNYSSSSLMQTQQLPVNQPHNTQKSLTNTRAPSTLTEGDAPSCSTSPSTNNCQISPSNLMKRNQQVPTTLGGPSVVEPTNHLMQELHSKSEMQIKHELPSVRGPDQMKYKGTIADQMEASSGTSYCIDPNNIPQNFPLPSFCMDGDVQSHPRNNLPFASNLDGLTPDTLLSRGYDSQKDLQNLLSNYGGAPRDIETELSTAAISSQPFGVPDMPFKPGCSSDIAINDPGVLNNGLWANQTQRMRTYTKVQKCGSVGRCIDVTRYKGYDELRHDLARMFGIEGQLEDPQRTEWKLVYVDHENDILLVGDDPWEEFVSCVQSIKILSSAEVQQMSLDGDLGHIPVPNQACSGTDNGNAWRGQYDDNSAASFNR 1192
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst9g02799 1192 SMART B3_2 202 304 IPR003340 GO:0003677
Spst9g02799 1192 Gene3D - 1060 1154 - -
Spst9g02799 1192 Pfam B3 DNA binding domain 202 303 IPR003340 GO:0003677
Spst9g02799 1192 SUPERFAMILY CAD & PB1 domains 1079 1143 - -
Spst9g02799 1192 MobiDBLite consensus disorder prediction 839 878 - -
Spst9g02799 1192 ProSiteProfiles B3 DNA-binding domain profile. 202 304 IPR003340 GO:0003677
Spst9g02799 1192 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 92 1154 IPR044835 GO:0003677|GO:0006355|GO:0009725
Spst9g02799 1192 FunFam Auxin response factor 1060 1154 - -
Spst9g02799 1192 CDD B3_DNA 201 293 IPR003340 GO:0003677
Spst9g02799 1192 Pfam Auxin response factor 328 410 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Spst9g02799 1192 Pfam AUX/IAA family 1062 1151 IPR033389 -
Spst9g02799 1192 MobiDBLite consensus disorder prediction 546 631 - -
Spst9g02799 1192 FunFam Auxin response factor 365 437 - -
Spst9g02799 1192 ProSiteProfiles PB1 domain profile. 1065 1158 IPR000270 GO:0005515
Spst9g02799 1192 FunFam Auxin response factor 200 304 - -
Spst9g02799 1192 MobiDBLite consensus disorder prediction 549 631 - -
Spst9g02799 1192 Gene3D - 365 436 - -
Spst9g02799 1192 Gene3D - 199 303 IPR015300 -
Spst9g02799 1192 MobiDBLite consensus disorder prediction 1170 1192 - -
Spst9g02799 1192 MobiDBLite consensus disorder prediction 727 755 - -
Spst9g02799 1192 SUPERFAMILY DNA-binding pseudobarrel domain 192 331 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst9g02799 Spst-Chr9 62230551 62237964 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst9g02799 77 564 B3 DNA Binding Superfamily AT1G19220 82.992 0.0 839
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Spst9g02799 AUX_IAA 2.9e-09 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst9g02799 K14486 - gmx:100804628 1744.94
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst9g02799 9 62230551 62237964 Spst9g02799 9 62230551 62237964 ECH
Spst3g02783 3 77387546 77388859 Spst9g02799 9 62230551 62237964 PCT