Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst9g02798 ATGGGGGCGAAGAAGCTTAACCAGGGAGTGAAAAACGAGGGTAATGGCAACAACGATAATGTTTTTGCTTCATGCTCCTTCTCCAGCCTTGGCCTTGATTCCAATTTGTGTGAACAACTTCATGAGAGGTTGGGGTTTGAAGTTCCGACGCTGGTGCAAGCTCAAGCGATTCCTGTTATTCTCTCTGGGCGTCATGCATTGGTGAATGCCGCTACGGGTACGGGGAAGACTGCTGCGTATCTCGCTCCGATTGTTCATCACTTGCAGGGTTATGAAAATCGGATTCAGCGCTCTGATGGAACATTTGCGTTGGTTCTTGTACCGACGCGGGAACTATGTTTGCAGGTTTATGAAATTCTTCAGAAGTTATTGCATCGATTTCATTGGATTGTTCCAGGATACATTATGGGTGGAGAAAATAGATCGAAGGAGAAAGCTAGGCTGCGCAAAGGCATATCTATTCTTATAGCAACCCCTGGGCGTCTTTTAGATCACTTGAAGAACACGACATCATTCTTGTACTCAAATCTGCGCTGGATAATTTTTGATGAAGCTGATCGGATTTTGGAATTAGGATTTGGAAAAGATATAGAGGAAATACTAGATCTTTTAGGTTCAAGGAAAACAGGGCACGATAACCAAGAGAATACAGTTCCAAGAAACTCTAAAATTCAAAGACAGAATTTGCTTTTATCTGCCACCTTAAATGAGAAGGTGAACCACCTTGCTAAAATTAGTCTAGACAATCCAGTGATGGTTGGTATTGATGGTAAGAAAATAGAACAAATTTCAACAAATGTAAGCAACGACCATTCAGAATCTGATGAAGATAATGAAGAAAATGATCCCAGTAAAATGCCAACAGTTGGAGATTACAAAGTCCCCATACAGTTGATTCAGAGATACATGAAAGTGCCTTGCGGTTCGCGGCTACCTGTTCTTCTTTCAATTCTAAAGCATCTCTTTGAAAGGGAACCTTCACAAAAGGTTGTTGTATTCTTTTCAACATGCGATGCAGTAGATTTTCACTATTCACTATTAAGCGAGTTTCAATTTTCATCCTATTCACAAACAGAAGATATCCGACAGAAGTTTCTTGGATGCAAAACATTCCGGTTACATGGTAATATGGTACAGGAGGACCGGAGAACCAGTTTTCAGACCTTCAAAAATGAGAAAGCTGCTTTGCTTTTGACTAGTGATGTTTCTGCCAGAGGCCTGGATTTTCCAAAGGTTAGATGTATAATACAGTACGATTCTCCTGGGGAGGCCACGGAATATGTTCATAGGGTTGGTAGAACTGCTCGACTGGGTGAAAAAGGAGAGTCATTATTATTTCTGCAACCGGTTGAGATGGACTATTTACAGGACTTGGAAAAACATGGTGTCTCGCTGACAGAGTATCCTGCCCTCAAAGTGTTGGATAGTTTTCCACTGTATGGACAAAAGAGCTACACAAAAAAGTCAGTGTTCTTAGAGTCACATCCCTGGGTCCTTTGTCTCCAGAAGGCACTTGAAGCCTTCATCTTGTCAAAGCCCGAGATGGATGAACTTGCCAAGAAGGCATTTTGCTCTTGGGTTCGGGCATACACAGCCCATCGTGGTGAGTTGAAAAGAATATTTATGATCAAGAAACTTCACTTGGGGCACGTAGCAAAAAGCTTTGCATTGAAACAACAACCCTCCTTAGTTGGACAGTCATTCCAAAAGCAAGCACAGAAAAGAAAGAGATTGGAGAAGAAAACTGGGTTGTCCAAAAAGAGAAAAGTTGCGAGTGTGACAGCACGCAGATCATGA 1797 0.4196 MGAKKLNQGVKNEGNGNNDNVFASCSFSSLGLDSNLCEQLHERLGFEVPTLVQAQAIPVILSGRHALVNAATGTGKTAAYLAPIVHHLQGYENRIQRSDGTFALVLVPTRELCLQVYEILQKLLHRFHWIVPGYIMGGENRSKEKARLRKGISILIATPGRLLDHLKNTTSFLYSNLRWIIFDEADRILELGFGKDIEEILDLLGSRKTGHDNQENTVPRNSKIQRQNLLLSATLNEKVNHLAKISLDNPVMVGIDGKKIEQISTNVSNDHSESDEDNEENDPSKMPTVGDYKVPIQLIQRYMKVPCGSRLPVLLSILKHLFEREPSQKVVVFFSTCDAVDFHYSLLSEFQFSSYSQTEDIRQKFLGCKTFRLHGNMVQEDRRTSFQTFKNEKAALLLTSDVSARGLDFPKVRCIIQYDSPGEATEYVHRVGRTARLGEKGESLLFLQPVEMDYLQDLEKHGVSLTEYPALKVLDSFPLYGQKSYTKKSVFLESHPWVLCLQKALEAFILSKPEMDELAKKAFCSWVRAYTAHRGELKRIFMIKKLHLGHVAKSFALKQQPSLVGQSFQKQAQKRKRLEKKTGLSKKRKVASVTARRS 598
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst9g02798 598 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 25 54 IPR014014 GO:0003724
Spst9g02798 598 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 21 254 IPR027417 -
Spst9g02798 598 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 57 253 IPR014001 -
Spst9g02798 598 SMART helicmild6 355 438 IPR001650 -
Spst9g02798 598 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 63 474 IPR027417 -
Spst9g02798 598 CDD SF2_C_DEAD 298 447 - -
Spst9g02798 598 FunFam RNA helicase 3 255 - -
Spst9g02798 598 CDD DEADc_DDX31 36 254 - -
Spst9g02798 598 SMART DUF4217_3 500 565 IPR025313 -
Spst9g02798 598 Pfam Domain of unknown function (DUF4217) 502 562 IPR025313 -
Spst9g02798 598 Pfam Helicase conserved C-terminal domain 316 438 IPR001650 -
Spst9g02798 598 MobiDBLite consensus disorder prediction 567 598 - -
Spst9g02798 598 MobiDBLite consensus disorder prediction 265 289 - -
Spst9g02798 598 PANTHER RNA HELICASE 24 568 - -
Spst9g02798 598 Gene3D - 3 256 IPR027417 -
Spst9g02798 598 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 181 189 IPR000629 -
Spst9g02798 598 Gene3D - 309 591 IPR027417 -
Spst9g02798 598 Pfam DEAD/DEAH box helicase 51 241 IPR011545 GO:0003676|GO:0005524
Spst9g02798 598 SMART ultradead3 45 263 IPR014001 -
Spst9g02798 598 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 313 485 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst9g02798 Spst-Chr9 62164322 62169035 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst9g02798 17 469 Eukaryotic Initiation Factors Gene Family AT3G19760 23.736 5.41e-34 132
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst9g02798 K14806 - gmx:100805157 1052.74
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst9g02798 9 62164322 62169035 Spst9g02798 9 62164322 62169035 ECH