Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst9g02782 ATGTTGAACCCTGAACCCTCGCCGCCTCCGCCACCGGTGATGACTCCGCAACCGGTGATGACTCCGCCGGCGACACCTCTCAACGGTGAAACGATGTCGCATAAGAAAAACCGCAGAACCAGAGTCTCCTTACCTCTGTCCTTGGAAGTGGTTGACCTTGACGTTGACGAGTCCGCTTCCTCCCTCTTTTTCACGCCGATCTCCTTCATAGGCTCGACCAAGTCAAACGCCATCTCCGTGGTGGAGCAGCACGATGCCGTTTCCAACCCTGTTTACGTCATTGACCTCTCCGACACCGAGGATGATGACGACGTTCGCATCCTCAATTTCACTCCGGCAAACACCTCCTTCGGCAAACGGAAAAAGTTCAAGGGAGAATCCTCCAACTCTGTCCCCTTTGTCTGCGAAATCTGCATCGAAACCAAAACTTCCAACGATGCTTTCTCCATCAACGGCTGTTGTCACGTGTACTGTAACAACTGTGTTGCGCTCTATGTGGAATCGAAGCTTGAGGATAACGTGGTCAATATCAGCTGTCCTGTGCCGCGATGCAGGGGATTATTGGAAGCGGAAGATTGCCGCTTGATTCTCACCCCCGAGATTTTGGATCGGTGGGGAAAAGCGCTGTGTGAAGCTGTGATTTCTGTGGACGAGAAGTTCTATTGCCCTTTTCCGGATTGTTCTACACTGTTGATTCGTGAGGGGAAGGACGAGGGTATCAGAGAATCGGAGTGTCCGAACTGTAGGAGGCTGTTCTGCGCCCTATGTACGGTACCCTGGCACGTAGACATGACATGCGAGGAGTTTCAGAAGCTGAGCGCGGATGAGAGGGGAAAAGAAGATGTGATGTTGATGAACCTTGCTAAGGAAATGATGTGGAAGAGGTGCCCCAGTTGTGGGTTTTACGTGGCCAAAACCCAAGGCTGCATGTACATGAAATGCAGGTGTGGGAGCGCATTCTGTTACAACTGTGGGGCTCCTAACTTAACTTTTTCTCATTCCTGCAACTCCTGTAGACATTAA 1023 0.5132 MLNPEPSPPPPPVMTPQPVMTPPATPLNGETMSHKKNRRTRVSLPLSLEVVDLDVDESASSLFFTPISFIGSTKSNAISVVEQHDAVSNPVYVIDLSDTEDDDDVRILNFTPANTSFGKRKKFKGESSNSVPFVCEICIETKTSNDAFSINGCCHVYCNNCVALYVESKLEDNVVNISCPVPRCRGLLEAEDCRLILTPEILDRWGKALCEAVISVDEKFYCPFPDCSTLLIREGKDEGIRESECPNCRRLFCALCTVPWHVDMTCEEFQKLSADERGKEDVMLMNLAKEMMWKRCPSCGFYVAKTQGCMYMKCRCGSAFCYNCGAPNLTFSHSCNSCRH 340
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst9g02782 340 SUPERFAMILY RING/U-box 210 271 - -
Spst9g02782 340 CDD BRcat_RBR_unk 216 269 - -
Spst9g02782 340 ProSiteProfiles TRIAD supradomain profile. 131 340 IPR044066 -
Spst9g02782 340 SMART ibrneu5 203 266 IPR002867 GO:0008270
Spst9g02782 340 SMART ibrneu5 276 338 IPR002867 GO:0008270
Spst9g02782 340 MobiDBLite consensus disorder prediction 1 39 - -
Spst9g02782 340 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 129 216 IPR013083 -
Spst9g02782 340 ProSiteProfiles Zinc finger RING-type profile. 135 183 IPR001841 -
Spst9g02782 340 SUPERFAMILY RING/U-box 133 212 - -
Spst9g02782 340 FunFam RBR-type E3 ubiquitin transferase 268 340 - -
Spst9g02782 340 Pfam IBR domain, a half RING-finger domain 287 333 IPR002867 GO:0008270
Spst9g02782 340 Pfam IBR domain, a half RING-finger domain 210 266 IPR002867 GO:0008270
Spst9g02782 340 SUPERFAMILY RING/U-box 277 338 - -
Spst9g02782 340 ProSitePatterns Zinc finger RING-type signature. 153 162 IPR017907 -
Spst9g02782 340 CDD Rcat_RBR_unk 292 328 - -
Spst9g02782 340 MobiDBLite consensus disorder prediction 1 23 - -
Spst9g02782 340 Gene3D - 263 340 - -
Spst9g02782 340 FunFam RBR-type E3 ubiquitin transferase 130 216 - -
Spst9g02782 340 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 82 327 IPR031127 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst9g02782 Spst-Chr9 62021757 62023558 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst9g02782 135 327 C3H Transcription Factor Family AT2G19610 35.610 2.40e-26 106
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst9g02782 K11975 - gmx:100803898 474.167
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst9g02782 9 62021757 62023558 Spst9g02782 9 62021757 62023558 ECH