Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst9g02780 ATGGCTTCTTCCAACGCCGTATCTTCTCTCAACGTCGTCGGATACGCGCACACCACTTCTCCACCAAACAACCATCTATCATCGCTATCACGCATCAGTCTCCTAACCCTAACGCTCCTCCTCCTCGCCGTTGTCATTTCCCTAGCCGTTTATTTCCTTATCCGTTACCGTAACCGTTTCCTCCGTCGCATCTCTCCATCATCCGCTGTATTATTCACCTCCGGGAATCGGATATCATCGGAGACCGCTTCTCCTTCCGTCGGAGACGGTCTCCCGGCTTTCACCTTCTCCTCCGTCACGAGGCGCTCCGCCGCCTCCGGCGGCGGAGCGGACTGCGCTGTTTGCTTATCGAAGTTCGAGCAGCACGACCTTCTCCGTTTGCTACCTTTCTGCTGCCACGCATTCCACGCTGAATGCATCGACACGTGGCTCCAATCGAACCTCACGTGTCCGCTCTGCCGATCCGCCGTCGATGCGTCGGAGTCCGACCTCGCGAAGGTGTTCCGCTCCTCGTCCGTCGCTGGCGGCGAGAGCTTCCGGCTTGAGATAGGGAACATCAGCAGCAGTGGCCGCCGCTCCACGGGGGCCGGTGAGGAAACACGCGGGAGGTCCTATTCCGTTGGCGCGTTCGAGTATTTCATCGACGAGGAGGCTGAGATTGAGGTTGCATTCAGTTATGCTAGCAGGCGAAGCGTTTCCGGCGAGAAAGACGAGGGTGTTGCGGTGGAGGCTGCGGCAGATTCTCTGCCGAGCTTGGCTGGTGAGGTAGGACGTGGAGGAAGTAGTAACAGTAATGGCTGGTTGAAGGATTACGTTGATCGTCTTTCGAATACGATGTCGTTTCGAAGTTCCGGAAGGTTCTTCACTGGGAGTAGTCGCCGAAGCGACGTCGTTGTAGGTGGAGATTACGACGCGGAAGCGAACCGTTTGGGGGATGATATCGGTGAAATGTTTCGATGGCTCTCGGGGGTTTGA 975 0.5692 MASSNAVSSLNVVGYAHTTSPPNNHLSSLSRISLLTLTLLLLAVVISLAVYFLIRYRNRFLRRISPSSAVLFTSGNRISSETASPSVGDGLPAFTFSSVTRRSAASGGGADCAVCLSKFEQHDLLRLLPFCCHAFHAECIDTWLQSNLTCPLCRSAVDASESDLAKVFRSSSVAGGESFRLEIGNISSSGRRSTGAGEETRGRSYSVGAFEYFIDEEAEIEVAFSYASRRSVSGEKDEGVAVEAAADSLPSLAGEVGRGGSSNSNGWLKDYVDRLSNTMSFRSSGRFFTGSSRRSDVVVGGDYDAEANRLGDDIGEMFRWLSGV 324
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst9g02780 324 FunFam E3 ubiquitin-protein ligase ATL6 74 160 - -
Spst9g02780 324 SMART ring_2 112 153 IPR001841 -
Spst9g02780 324 ProSiteProfiles Zinc finger RING-type profile. 112 154 IPR001841 -
Spst9g02780 324 SUPERFAMILY RING/U-box 108 159 - -
Spst9g02780 324 CDD RING-H2_EL5-like 111 154 - -
Spst9g02780 324 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 72 160 IPR013083 -
Spst9g02780 324 Pfam Ring finger domain 111 154 IPR001841 -
Spst9g02780 324 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF13-LIKE 32 226 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst9g02780 Spst-Chr9 61990580 61991554 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst9g02780 35 174 C3H Transcription Factor Family AT5G17600 39.726 3.09e-22 94.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst9g02780 K10663 - gmx:100804962 408.297