Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst9g02747 ATGCTTTCTGTGGCCACCTCCTATATTCTTCTTTCTCCCCATCTCTCTCAACTTCCTCTATTGGCCCGAGTGAATTCATGCTGCAAGTTTCGATTGTTCAATTCTGGGTTACTTCCCCACGGTCTAAGGGTTGATTGTGGCATCTTTGCTGGTTTTGGGTATGTAGCTGTTGCTTGGATCCACGGTTTGAAGTCGTTGTGTTTTTACTGTAATTTCTCCAATTGGGTGTTGTGTAGTGGAGGATTTGGAATCTGGGTGTTGGAGATTTTGTTGATATTTTTTTTTCCTGGGGTGTTTGGATTCATGGAGACTCAATTAGAGGGGAAAAATCAGTATTTGTATGGACCTGTGGTGCCAGAGATGAAGAGTGTTGGGAAGAGAAGTTTGGAGTGGGATTTGAATGATTGGAAGTGGGATGGGGATCTTTTCACTGCTACGCAACTGAATTCAGTGTCATCAGATTGTATGAGTCGTCAGCTGTTTCCTACTGATCCTGAAATTCTTGCAACTGGTGAAGCTTCTAACAATTTGTCTTCTGCATATGACGATGTTAACCTTGCGGAAGGAAAGAGAGAATTGGAGAAGAGAAGGAGAGGTGTTATTAATGAAGGAGGAGTGGAGATGAATGATGGAGCTGGTTCTCTTAATTTGAACCTTGGGCGTCAAGTATACCCTATCATAGAAGGGGAGGAAAAAAGTGGAAAGAAGACAAAGATAACTGCGAGTACTTTGAACCGGGCTGTTTGTCAGGTGGAAGATTGTAGGGCTGATCTTAGTAATGCGAAGGATTATCACCGCCGCCACAAAGTTTGTGATATGCATTCTAAGGCTAGCAATGCACTAGTTGGAAATGTTATGCAGAGATTCTGTCAACAGTGTAGCAGGTTTCATGTTCTTCAAGAATTTGATGAAGGGAAGAGAAGTTGTCGAAGGCGACTGGCCGGCCACAATAAGAGGAGGAGGAAAACACATCCTGATGCTAGTGTAGTTAATGACAACTCTCTGAATGAAGAAAAGGGCAGTAGCTATCTGTTAATGAGTTTGCTAAGGATACTGTCCAATATGCATTTCGCCAGATTTGTTCACTGGAAAAGCTTGCCAGAGCATAGGTGGTCACTGCAGTTCTGGTCACTGGCAAGGGTGGTGGCTGGAGAAGGTTCAACAGAGTTGGTTGGGCATGGTTTAGGATTTCACAAGAGTAGACAGGTGGTTGTCTTGAACAATTTAGCTCGACTCTTTTTCTCTCGTATGGACTTTCCATGTCCAAAAGGATGGGAAAATCATTTGGCAAATGGCTCAGATAATATGAGAAACCAGGATGTTCTAACTCATCTGCTGAGGAACCTGGCAAGTATGGCTGGTACAATTAATGGAAGAAATTTAGTTTCTTTGTTGGAGGGATCTCAAGATTTGGTAAAAGCTGGGACATCTGGTGCTGCACAGAATGTTCCGAACACAAATTCAAATGGTCCTGAATCATCCAGACCTTTTGATTCTTCTATCAAAATGGATAATGGTCTAATCAGTCAGAACCCTCCAGAGTCTATGGTACAATGTGAGATGACTCCTGCCAATGATATGACTAAGAAATGTATCACCTCAGATTGTGATGGAAGAGGAAGTTTAAAATCTCCTTCAGTACCACAGTCCTCAAATGCAATTCTATCACGGGATAGCCTTCGACCCCAATCAGTTGCAGCAGAGACTGCTATTGGAAGAATTGGGTTAAGTAATATTGACCTGAATAATGCATATGATGATGATGTACAGGATTATGTTGGGAACACGAGGAATTCTCGTCCTCCTTTCCCTCCAGGGAATGCACCTCTTGATCATCCTTTATGGGTCCAATGTGACTCTCTCAAGTCAAGTCCACCGCAGACAAGTAGAAACTCTGATTCAACCTCTACACAGTCACCTTCAAGTTCTAGTGGAGAAGCTCAGAGTCGCACAGATAGAATTGTTTTCAAACTGTTTGGCAAGGCTCCAAATGATTTCCCCCATGCTCTCCGATCACAGATCCTTAACTGGTTATCCCACAGTCCCACTGAGATAGAGAGCTATATAAGGCCTGGCTGTGTCATACTAACTGTATATCTCCGTCTAGAAAATTCTGCTTGGGAAGAGCTATGCTATAATCTAGGATCCACCTTGAGAAAACTTGCTGGGTCGAATGATTCTTTCTGGAGAACAGGATGGATATATACAAGAGTGCAGCACTCTGTAGCTTTTCTGTATAATGGTCAGGTGGTCTTAGATGTACCATTGCGCTTCAAAAGTCCACAGAGTTGTCAGATTTTTGGCGTTAAACCACTTGCTGTTTCTTCAAGTTCTAGTGCTCAATTTATTGTGAAAGGAGTCAACCTTTTGCTTTCTAACACCAGGTTCCTCTGTGCACTTGAAGGGAAGTATCTAGTGCAAGATAGTTGTTATGATTTGATTGATGCTGATGCTGCCATTGCACATCATGAGCTTCAGCATCTCAGCTTCTCTTGCAATATACCAAATGTGACTGGAAGAGGGTTTATCGAGGTGGAAGATAATGGTCTTAGCAGCTGTTCCTTTCCATTCATAGTTGCAGAGCAAGAAATTTGTTCAGAGATATGTAAGCTCGAGAATGTCATTGAGGCAGCTGAGACTGCTGATGACATCCGAATAAAAACTAAACTAATGGAAGAAAAGACTCAAGCATTGTATTTCGTACAAGAAATGGGTTGGCTCCTTCACAGAAATCGTGTGAAAGATAGGCTAGGTCATGTGGCACCTGTACAAGATCGCTTCCATTTTAATCGGTTCATGTGGCTTGTTGGCTTCTCTTTGGACCATGACTGGTGTGCTGTGATGAAAAAGCTCTTGAACATTATCTTTGAGGGCACTGTTGATATAGGAAATCGTAGCTCTGTTGAGTTAGCATTGTCAGAGATGGATCTTCTGCACAAAGCTGTAGAAAGAAATTGCAGGCCTATGGTGGAACTACTGTTAAAATTTGAGCCAGGTAATGCTTCAGATCGTGGAGACAGTAAAGAGAAGCAAGTCAACAAGTCCCCTGACAGATTCATATTCAGACCTGATACCGTTGGGCCTACTGGGCTGACTCCCCTTCATGTTGCAGCAAGTATGCATGGTGCTGAGAATGTGTTGGATGCATTAACTGATGATCCAGGACTGGTTGGAACTGGGGCATGGAAAAGTGCTCAGGACACTACAGGTTTGACCCCCTATGACCATGCATCCCTGCGGGGCTACTACTCCTACATTCAACTTGTCCAGAGTAAAACAAGAAACACATGCAAAAGTGAATATGTGCTTGATATCCCAGGCACTCTTGTAGATAGTAACATAAAGCAGAAGCTATCAGATGGGCAGAGGTCATCAAAAGTTTCAAGTTTGCAAACTGAAAAGATTGAAACAACAGCAATGCCGCGACATTGTGGGCAATGCCAGCAGAAGCTGGCATATGGTGGTGCGAGAAGAGCAGTGGTTTATAGGCCAGCAATGCTGTCCATGGTGGCCATTGCAGCTGTGTGTGTCTGTGTGGCTTTGCTATTCAAAAGCTCGCCCAAAGTCTATTATGTATTCCAGCCCTTCAGTTGGGAATCATTGGAGTATGGTTCAATGTAA 3621 0.4322 MLSVATSYILLSPHLSQLPLLARVNSCCKFRLFNSGLLPHGLRVDCGIFAGFGYVAVAWIHGLKSLCFYCNFSNWVLCSGGFGIWVLEILLIFFFPGVFGFMETQLEGKNQYLYGPVVPEMKSVGKRSLEWDLNDWKWDGDLFTATQLNSVSSDCMSRQLFPTDPEILATGEASNNLSSAYDDVNLAEGKRELEKRRRGVINEGGVEMNDGAGSLNLNLGRQVYPIIEGEEKSGKKTKITASTLNRAVCQVEDCRADLSNAKDYHRRHKVCDMHSKASNALVGNVMQRFCQQCSRFHVLQEFDEGKRSCRRRLAGHNKRRRKTHPDASVVNDNSLNEEKGSSYLLMSLLRILSNMHFARFVHWKSLPEHRWSLQFWSLARVVAGEGSTELVGHGLGFHKSRQVVVLNNLARLFFSRMDFPCPKGWENHLANGSDNMRNQDVLTHLLRNLASMAGTINGRNLVSLLEGSQDLVKAGTSGAAQNVPNTNSNGPESSRPFDSSIKMDNGLISQNPPESMVQCEMTPANDMTKKCITSDCDGRGSLKSPSVPQSSNAILSRDSLRPQSVAAETAIGRIGLSNIDLNNAYDDDVQDYVGNTRNSRPPFPPGNAPLDHPLWVQCDSLKSSPPQTSRNSDSTSTQSPSSSSGEAQSRTDRIVFKLFGKAPNDFPHALRSQILNWLSHSPTEIESYIRPGCVILTVYLRLENSAWEELCYNLGSTLRKLAGSNDSFWRTGWIYTRVQHSVAFLYNGQVVLDVPLRFKSPQSCQIFGVKPLAVSSSSSAQFIVKGVNLLLSNTRFLCALEGKYLVQDSCYDLIDADAAIAHHELQHLSFSCNIPNVTGRGFIEVEDNGLSSCSFPFIVAEQEICSEICKLENVIEAAETADDIRIKTKLMEEKTQALYFVQEMGWLLHRNRVKDRLGHVAPVQDRFHFNRFMWLVGFSLDHDWCAVMKKLLNIIFEGTVDIGNRSSVELALSEMDLLHKAVERNCRPMVELLLKFEPGNASDRGDSKEKQVNKSPDRFIFRPDTVGPTGLTPLHVAASMHGAENVLDALTDDPGLVGTGAWKSAQDTTGLTPYDHASLRGYYSYIQLVQSKTRNTCKSEYVLDIPGTLVDSNIKQKLSDGQRSSKVSSLQTEKIETTAMPRHCGQCQQKLAYGGARRAVVYRPAMLSMVAIAAVCVCVALLFKSSPKVYYVFQPFSWESLEYGSM 1206
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst9g02747 1206 MobiDBLite consensus disorder prediction 313 333 - -
Spst9g02747 1206 MobiDBLite consensus disorder prediction 539 562 - -
Spst9g02747 1206 MobiDBLite consensus disorder prediction 620 649 - -
Spst9g02747 1206 Pfam SBP domain 249 322 IPR004333 GO:0003677
Spst9g02747 1206 SUPERFAMILY Ankyrin repeat 973 1091 IPR036770 -
Spst9g02747 1206 MobiDBLite consensus disorder prediction 617 649 - -
Spst9g02747 1206 Gene3D - 946 1117 IPR036770 -
Spst9g02747 1206 SUPERFAMILY SBT domain 247 327 IPR036893 GO:0003677|GO:0005634
Spst9g02747 1206 Gene3D - 240 310 IPR036893 GO:0003677|GO:0005634
Spst9g02747 1206 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 213 1091 IPR044817 GO:0003677
Spst9g02747 1206 MobiDBLite consensus disorder prediction 590 609 - -
Spst9g02747 1206 FunFam Squamosa promoter-binding-like protein 14 240 310 - -
Spst9g02747 1206 ProSiteProfiles Zinc finger SBP-type profile. 246 323 IPR004333 GO:0003677
Spst9g02747 1206 MobiDBLite consensus disorder prediction 476 511 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst9g02747 Spst-Chr9 61666985 61677318 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst9g02747 273 356 SBP-box Gene Family AT2G47070 69.048 4.22e-30 126
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Spst9g02747 SBP 6.7e-29 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst9g02747 - - gmx:100776125 1315.44
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst9g02747 9 61666985 61677318 Spst9g02747 9 61666985 61677318 ECH
Spst3g02878 3 78281366 78287481 Spst9g02747 9 61666985 61677318 PCT