Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst9g02734 ATGGAGCTGTTGAAATTGGATACAAATTCTGACTCCAAAGAGGATAACCCTTTGGAGAACAAGTCAAAAAATAACAATGCACTTGAGTCTTCTGACAGTCTGAGAAATAGAAAGATATCAGCTCGATGGAATCCGGTTGGAGCATGTCGACCTATAATTCAAGAAGCACCAGTTTTTTATCCGACTATTGAAGAGTTTGAAGACACACTCAGTTACATAGAAAAAATAAGACCCTTCGCTGAACCCTATGGCATATGTAGGATTGCTCCTCCAGCTTGCTGGGTTCCACCCTGTCCTATTAAGGAGAAAGATGTATGGGACAATGCTGCATTTGCCACCCGTATTCAGCAAATTGATTTGCTTCAAAATAGGGCACCTATGAGGAAAAAATGTAGGGGAAGGAAGCGAAAACGTGGAAAGCATTCCAGAGCAGGCACATGTAAGAGGAAGCCTGCTAATGCAGCTTGTGAAGAGAAATTCGGATTTCAATCAGGATCAGATTTCACGCTTAAAGACTTTCAGAAATATGCTAATTTTTTTAAGGAATCCTATTTTGGTTTGAAAGATGCCAATGGAGACAGAATAGATAGTGACAGTAACCATCAGACAAGATGGGAGCCCTCTGAGGAGGAAATTGAAGGTGAATACTGGCGAATAATTGAGCAACCAAGTGATCCGGTTGAGGTGTATTATGGAGCTGACTTGGAAACTGGATCACTTGGAAGTGGTTTTCCTAAGGCATCATCCATAACTACGAGTGACTCAGATCAATATGTACTGTCTGGTTGGAATCTGAACAATTTCCCGCGACTACCAGGTTCTTTGCTAAGCTACGAAGGAAGTGACATATCAGGAGTTCTAGTGCCATGGCTGTATGTTGGCATGTGTTTTTCATCATTTTGCTGGCATGTTGAGGACCATCACCTCTATTCACTGAACTATTTGCACTGGGGTGACTCAAAAGTATGGTATGGAGTACCTGGAAGCCATGCTCCAGACCTTGAAAATGCTATGAGGAAGCACTTACCACATTTATTCGAGGAACAACCAAATCTATTAAATGAACTGGTTACCCAGTTTTCTCCTTCAATTCTTAAATCTGAGGGAGTGCCTGTGTATCGCGCAGTTCAGCATTCTGGGGAATTTGTTATTACCTTTCCAAGGGCATATCATGCTGGCTTCAATTGTGGCTTCAACTGTGCAGAGGCAGTGAATGTGGCTCCTATTGATTGGTTAATGCATGGACAGAATGCTGTCGAACTTTACAGTTTACAATGCCGAAAAACATCCTTGTCCCATGACAAGGTGTTATTTCGATCTGCACTGGAAGCAGGACGGGCCATTACAGAACTAGCTCTTGGAAATGAATCTCCAAAAAATTTGAAATGGAGAAGTGTCTGTGGGAAAGATGGAGATCTTCCCAAGGCAGTTAAGGCAAGGATAAAGATGGAAGAAGAAAAGCTAGATTGCCTTCCAACTCATCTTAAGGTTCTCAAGATGAACAGTGACTTTGATTTGTACACGGAAAGAGAATGCTTCTCTTGCTTCTATGACTTGCACCTATCTGCTGTGGGATGTGAGTGCTCTCCTGGCAGATATTCTTGTCTTAAGCATGCTAATTTGTTCTGCTCATGCGGAATGGACAAAAGATTTGTTCTGCTTCGATATACTAGAAATGAGCTAAATAATTTGCTTGAAGCATTAGAAGGAGAATCACATGGTATTGAGGTGTGGGCAAATAAAGATTGTGGAATGGTTTCCGCCAATGCCAATGAGGTTTGCATAGATAAATCAGATGTTGAAAAAGATATCTACAAAACCAAGAATTGTGAAGAAAGGGATAACTTAACTGGCTGTGTAGGAACCAAGGATAGGTCAAATTTAAACACACCTAGTAGTCCTAATAGTCATATTACTTCGAAGATAGTGCAGTCTGAGTCTCGCCCTGTAACTTCTAGTGCAGCATATGACAGTATAGATAGTCATTGTGACAATATTAGTGATAAAACGTTTGTCGCAGACAAGGAAGATAAAATGGATCAGAATAGTTATCTGGATTTGAATCTTGATGTTACCTCTGGTGAAAATGAAAATCATGTGCTGGATATTGCAGATAACCATTACAATAAAGGCGTTTCAGAAGACGAAGAAGCTTTCATGTAA 2163 0.4078 MELLKLDTNSDSKEDNPLENKSKNNNALESSDSLRNRKISARWNPVGACRPIIQEAPVFYPTIEEFEDTLSYIEKIRPFAEPYGICRIAPPACWVPPCPIKEKDVWDNAAFATRIQQIDLLQNRAPMRKKCRGRKRKRGKHSRAGTCKRKPANAACEEKFGFQSGSDFTLKDFQKYANFFKESYFGLKDANGDRIDSDSNHQTRWEPSEEEIEGEYWRIIEQPSDPVEVYYGADLETGSLGSGFPKASSITTSDSDQYVLSGWNLNNFPRLPGSLLSYEGSDISGVLVPWLYVGMCFSSFCWHVEDHHLYSLNYLHWGDSKVWYGVPGSHAPDLENAMRKHLPHLFEEQPNLLNELVTQFSPSILKSEGVPVYRAVQHSGEFVITFPRAYHAGFNCGFNCAEAVNVAPIDWLMHGQNAVELYSLQCRKTSLSHDKVLFRSALEAGRAITELALGNESPKNLKWRSVCGKDGDLPKAVKARIKMEEEKLDCLPTHLKVLKMNSDFDLYTERECFSCFYDLHLSAVGCECSPGRYSCLKHANLFCSCGMDKRFVLLRYTRNELNNLLEALEGESHGIEVWANKDCGMVSANANEVCIDKSDVEKDIYKTKNCEERDNLTGCVGTKDRSNLNTPSSPNSHITSKIVQSESRPVTSSAAYDSIDSHCDNISDKTFVADKEDKMDQNSYLDLNLDVTSGENENHVLDIADNHYNKGVSEDEEAFM 720
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst9g02734 720 Pfam jmjN domain 57 90 IPR003349 -
Spst9g02734 720 ProSiteProfiles JmjC domain profile. 257 423 IPR003347 -
Spst9g02734 720 Pfam C5HC2 zinc finger 512 564 IPR004198 -
Spst9g02734 720 MobiDBLite consensus disorder prediction 1 20 - -
Spst9g02734 720 Gene3D Cupin 41 407 - -
Spst9g02734 720 SUPERFAMILY Clavaminate synthase-like 257 440 - -
Spst9g02734 720 SMART cupin_9 257 423 IPR003347 -
Spst9g02734 720 PANTHER LYSINE-SPECIFIC DEMETHYLASE 52 649 - -
Spst9g02734 720 ProSiteProfiles JmjN domain profile. 56 97 IPR003349 -
Spst9g02734 720 MobiDBLite consensus disorder prediction 1 33 - -
Spst9g02734 720 Pfam JmjC domain, hydroxylase 290 406 IPR003347 -
Spst9g02734 720 MobiDBLite consensus disorder prediction 622 646 - -
Spst9g02734 720 SMART JmjN_1 55 96 IPR003349 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst9g02734 Spst-Chr9 61577444 61583092 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst9g02734 10 593 JUMONJI Transcription Factor Family AT1G30810 60.732 0.0 720
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Spst9g02734 JmjC 1.7e-46 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst9g02734 K11446 - gmx:100801775 1218.37