Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Spst9g02732 | ATGAAAGAGGTTATGAGGAACGAACTTGTGTGTACTGGGTGTAGGAATGTCATGGAGTACGCTAGAGGAACAGCGGAACTTCGTTGTGGATTGTGCAACACCGTAACCCGTGTTCCTCCTCCTGGAATGCAATTGTCCCAACTTTCTTGTGGAGGTTGTAACACAGTGTTAATGCACGCCCGTGGTGCTGCATATGTGAGATGCACCAGATGTCAAACTATCAATCTTGTATCCGAACCTCATCAAGAGTTCCAACTCCGTTGTGCAAACTGCCAGAACATAGTCATGTATCCTCCTGGAGCTCCCTTTGTCCGATGTCCAATTTGTAACAATATTACTAATGTGGCAGGCCCTTCAGGCTCTTCCTAG | 369 | 0.4688 | MKEVMRNELVCTGCRNVMEYARGTAELRCGLCNTVTRVPPPGMQLSQLSCGGCNTVLMHARGAAYVRCTRCQTINLVSEPHQEFQLRCANCQNIVMYPPGAPFVRCPICNNITNVAGPSGSS | 122 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Spst9g02732 | 122 | Pfam | LSD1 zinc finger | 88 | 112 | IPR005735 | - | |
Spst9g02732 | 122 | Pfam | LSD1 zinc finger | 50 | 74 | IPR005735 | - | |
Spst9g02732 | 122 | Pfam | LSD1 zinc finger | 11 | 35 | IPR005735 | - | |
Spst9g02732 | 122 | PANTHER | PROTEIN LSD1 | 8 | 116 | IPR040319 | - | |
Spst9g02732 | 122 | NCBIfam | zinc finger domain, LSD1 subclass | 9 | 38 | IPR005735 | - | |
Spst9g02732 | 122 | NCBIfam | zinc finger domain, LSD1 subclass | 85 | 115 | IPR005735 | - | |
Spst9g02732 | 122 | NCBIfam | zinc finger domain, LSD1 subclass | 47 | 77 | IPR005735 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Spst9g02732 | Spst-Chr9 | 61567933 | 61571853 | Dispersed |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | C2C2-LSD | Spst9g02732 | zf-LSD1 | 9.8e-05 | No_clan |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Spst9g02732 | - | - | oeu:111368698 | 146.362 |