Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst9g02732 ATGAAAGAGGTTATGAGGAACGAACTTGTGTGTACTGGGTGTAGGAATGTCATGGAGTACGCTAGAGGAACAGCGGAACTTCGTTGTGGATTGTGCAACACCGTAACCCGTGTTCCTCCTCCTGGAATGCAATTGTCCCAACTTTCTTGTGGAGGTTGTAACACAGTGTTAATGCACGCCCGTGGTGCTGCATATGTGAGATGCACCAGATGTCAAACTATCAATCTTGTATCCGAACCTCATCAAGAGTTCCAACTCCGTTGTGCAAACTGCCAGAACATAGTCATGTATCCTCCTGGAGCTCCCTTTGTCCGATGTCCAATTTGTAACAATATTACTAATGTGGCAGGCCCTTCAGGCTCTTCCTAG 369 0.4688 MKEVMRNELVCTGCRNVMEYARGTAELRCGLCNTVTRVPPPGMQLSQLSCGGCNTVLMHARGAAYVRCTRCQTINLVSEPHQEFQLRCANCQNIVMYPPGAPFVRCPICNNITNVAGPSGSS 122
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst9g02732 122 Pfam LSD1 zinc finger 88 112 IPR005735 -
Spst9g02732 122 Pfam LSD1 zinc finger 50 74 IPR005735 -
Spst9g02732 122 Pfam LSD1 zinc finger 11 35 IPR005735 -
Spst9g02732 122 PANTHER PROTEIN LSD1 8 116 IPR040319 -
Spst9g02732 122 NCBIfam zinc finger domain, LSD1 subclass 9 38 IPR005735 -
Spst9g02732 122 NCBIfam zinc finger domain, LSD1 subclass 85 115 IPR005735 -
Spst9g02732 122 NCBIfam zinc finger domain, LSD1 subclass 47 77 IPR005735 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst9g02732 Spst-Chr9 61567933 61571853 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-LSD Spst9g02732 zf-LSD1 9.8e-05 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst9g02732 - - oeu:111368698 146.362