Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst9g02696 ATGAACAAGATCAAATTTCAAATTGATGGCACCATTGTTGCCCCTTCAGATTATAGGTCCTTTAGTAATTCTGGAGTTTGGATCTTGTTCAGACATCTTAGTGGCCTTTTAATTCTTGGAGGGACCCTTGATGGAAAGGGCCAGAGCTACTGGAATTGTAAAATAAATGTCAAGAGTTGTCCCATTGGAGCAAGAGGAATACACTTTGCGGTGGACCATTGCAGGCAGGTTTTGTTTGAACATGTGAACATCAATGCCCCCAGCACAAGCCCTAACACAGATGGAATCAACGTGCTGCTTTCCTCGGGAATCACGGTCAGCCATGCCACCACAGGCACTGGCGATGATTGCATATCCTTGAGCTACGGCAACACCCATGTGTGGATTGAGCACGTCAATTGTGACCCTGGACATGGCATTAGCATTGGGAGTCTGGGGAAGTTTGAACATGAGGCTGGAGTTCACAATGTGACAGTGATGAGTTCAACCTTCGACCGAACACAAAACGGGGTTAGGATAAAATCATGGGCACGACCAAGCCATGGGTATGCAAAAGACATTAGTTCTGGGGTGAAGATGATCAAAGTGTTGTATGAAAACATAAAGGGAACTTCAGCAAGCAGAGAAGCTATCAATTTCGATTGCAGCAAAAGCAACCCGTGTCAGGGTATCAAACTGCATGACATAAACCTTGTTTACAACAAGGAAACTGCAACGTCAACTTGTACCAATGCTCTTGGGATTTCCAGTGGAGTAGTCATCCCAAAGGGGAGTGAGTCCAACACCACCACTCAAATCATTGACATGTTAAATATGGGTCGTCCAAAATTAATCTTGAAACCCATCACAAATGGGAGAGAACGTGATTTAGCTTTCATGAAGAGGAAGAAGGGACTGATAAAGACAATATCTGAATTTTCTAGAGTATGTGGAGTGAGAACTTGCTTGATTATGTATGATGGCAATGGTGATTCTCCACCACTGACTTGGCCCCAAGACCCCAATGAGATGCATTCCATCATTCAAAGGTATGAGAGTATAATGTATGACAGAATTCCTAAAAACTTTGATCTCAGTACCTTTTTTGAGATTAGGAAAAATATGGTTGACACTGAGATTTCCAAAGTTCAAAAGGACACTCTCAAGATCAAATATCCAACTTGGCATCCATGTTTTGACAACCTAGGTGCTGAAGAATTGAGGAATTTCATTGCTATTTTGGACATTAAGCTTGAAGCTTGTAATCAAAGAACCAAAATGTTCAAATGCAAGAAACAAAATGAAGCTGAGTTCAACTTCATGCAATGCTTGGTTCAACCAGAGTGTGTTCTGCCAAACCCAAGCCAACCTGGTTTCATGGAGAACATTTCTCAAAATCAATCTAGTCTTTCTCCTGTGATGCCTCTCACTGATGGTAATCTTGTAGCATCTTACCTGCACAAATTTGAAAAGGGTTCTAGTTCTCAATCCCAAATGCTTAACTTTGATTCAAATCTTATGCATTTGGAGGCAGAGCACAAAGGGGTGGTTGACACAACCAATCATGTGGTTGGTTCACAAGATTATGGTAGCCAAGTTGATGCTTTTGGAAATTCTTCAAATAAACTTGTTCCTTCTGATCTACTCCATGAGTCTTTGAATATTTGTAATCTACTTGGTGAAATTCAAAGTATGAATCAACATTGGAGGAGTAATCAACATCAAGCACAGATGATTGGAGGAAGTAACACAGCCATGAATGATGTTACTACTTATGATGCTACTTTACTTGGAAATCAGTACAACCCAGAGTCTTCACTCTGCAATTACAATGGAGTTGTGCAATCCTATAACTATGATGCTCCATTGCAGAGCATTGGTTTTCAAGTGGAAAATCTGCAACAAATGATAGTTTCAAAATCATTAGTGATAGTATTGAGCGACAAAGAAGAGAAGCTACTCACTTATGGGAACAATATGATTATGTTAGTCTTTCAACGTGTACAAACTTTAGTTGGAGAGGGGAATAACATTCCCACTGATGAAAAAAAGAGAATTGGACATCAACATGCTCTTTTTTATCCTCAAGAAACGGTTACATTAATATGGCTGCATAAGACATCTAAGCTTAATAAAATATATCGGAAGATACAAAACTATAGACAGGAGTCTTCAACATCCGCCAGCCAAAGCATTAGGGATCTCCTATCCATTTGTAAACCATTGAAACAAGCTCATTGTCATACAGGTGAAATCGCTTACAGCTGCAAGTTCCACCAGGGTTCCAATTATTTGAACTCCTTCTCCCTTCCTGTATGTTCTAATGATATTCGGTTGTGGAACCGCAACCACCTCGTCTCTTGA 2343 0.4042 MNKIKFQIDGTIVAPSDYRSFSNSGVWILFRHLSGLLILGGTLDGKGQSYWNCKINVKSCPIGARGIHFAVDHCRQVLFEHVNINAPSTSPNTDGINVLLSSGITVSHATTGTGDDCISLSYGNTHVWIEHVNCDPGHGISIGSLGKFEHEAGVHNVTVMSSTFDRTQNGVRIKSWARPSHGYAKDISSGVKMIKVLYENIKGTSASREAINFDCSKSNPCQGIKLHDINLVYNKETATSTCTNALGISSGVVIPKGSESNTTTQIIDMLNMGRPKLILKPITNGRERDLAFMKRKKGLIKTISEFSRVCGVRTCLIMYDGNGDSPPLTWPQDPNEMHSIIQRYESIMYDRIPKNFDLSTFFEIRKNMVDTEISKVQKDTLKIKYPTWHPCFDNLGAEELRNFIAILDIKLEACNQRTKMFKCKKQNEAEFNFMQCLVQPECVLPNPSQPGFMENISQNQSSLSPVMPLTDGNLVASYLHKFEKGSSSQSQMLNFDSNLMHLEAEHKGVVDTTNHVVGSQDYGSQVDAFGNSSNKLVPSDLLHESLNICNLLGEIQSMNQHWRSNQHQAQMIGGSNTAMNDVTTYDATLLGNQYNPESSLCNYNGVVQSYNYDAPLQSIGFQVENLQQMIVSKSLVIVLSDKEEKLLTYGNNMIMLVFQRVQTLVGEGNNIPTDEKKRIGHQHALFYPQETVTLIWLHKTSKLNKIYRKIQNYRQESSTSASQSIRDLLSICKPLKQAHCHTGEIAYSCKFHQGSNYLNSFSLPVCSNDIRLWNRNHLVS 780
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst9g02696 780 SMART madsneu2 272 331 IPR002100 GO:0003677|GO:0046983
Spst9g02696 780 Gene3D - 1 276 IPR012334 -
Spst9g02696 780 PANTHER - 188 245 - -
Spst9g02696 780 Pfam Glycosyl hydrolases family 28 188 245 IPR000743 GO:0004650|GO:0005975
Spst9g02696 780 Pfam Glycosyl hydrolases family 28 65 178 IPR000743 GO:0004650|GO:0005975
Spst9g02696 780 SUPERFAMILY SRF-like 272 350 IPR036879 GO:0003677|GO:0046983
Spst9g02696 780 ProSitePatterns Polygalacturonase active site. 131 144 IPR000743 GO:0004650|GO:0005975
Spst9g02696 780 SUPERFAMILY Pectin lyase-like 4 262 IPR011050 -
Spst9g02696 780 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 281 323 IPR002100 GO:0003677|GO:0046983
Spst9g02696 780 Gene3D - 285 360 IPR036879 GO:0003677|GO:0046983
Spst9g02696 780 ProSiteProfiles MADS-box domain profile. 272 332 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst9g02696 Spst-Chr9 61034412 61048044 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst9g02696 2 257 Glycoside Hydrolase AT2G43890 44.300 6.45e-86 276
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Spst9g02696 Glyco_hydro_28 1.5e-35 CL0268
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst9g02696 K01184 - vra:106760100 492.656