Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst9g02693 ATGGCGTGCAATGCTTTAACAATGATGAATTCGGTTCAGGCAGTTTGGAGCGTTGAGCAGTTGGATATGTTAGCTTGTACTCTCTTATTGTTGAAGGGTGATGCAATGTGGCAGTCTTTTGATCCTTCATCTTTGGGTGCTTCCAAGATTCCATCTATAAAAATACCTGGAAAATCCGGCAATGGTACATGGGAGGCTTTGTCTGGATCTAGTTCCTACCATGCTTCATCTGATGCTAGCCTCTTTTCAAGCTCATTACCTGTGCTTCCACATGAAAAATTAAACTTGAATGAAACTGAAAATGGTTATCAATCTGTTGATGATATCTCGTCTGGATTTAAGAAGCTCCATCAAGATGCTGAGGGAAATGGTTCACTTGAAGATGGTGATGCTCCTGCTATTGGACCTGTGCTTCCTGATGATGAGGATGAGCTTTTAGCTGGCATAATGGATGATTTTGACCTAAGTGGTTTGCCCGGATCCCTTGAGGACTTGGAAGAGTATGATCTGTTTGGTAGTGGTGGAGGTATGGAACTAGAAACTGATCCGCAGGATAGTCTCACTGTGGGTATGTCTAAGTTAAGCTTTGCTGATAGTACTGTTGGCAATGGTTTGCCACATTATTCCTTTCCTAATGGGGTGGGAACTGTTGCTGGAGAACATCCATATGGAGAGCATCCTTCTCGAACGTTATTTGTTCGAAATATTAACAGTAATGTGGAGGACTCAGAGCTGAGAGCCCTTTTTGAGCTATATGGTGATATAAGAACCCTATATACGGCATGCAAACATCGGGGATTTGTAATGATATCCTATTACGACATCCGTGCTGCTCGAACAGCTATGAGAGCATTACAAAATAAACCACTGCGGCGCAGGAAACTAGATATTCACTTCTCAATACCAAAGGATAATCCATCAGACAAGGATATAAACCAAGGAACATTGGTAGTTTTCAATCTGGATCCATCTGTTTCAAATGAAGACCTCCGCCAAATATTTGGGGCTTATGGAGAGGTCAAAGAGATAAGGGAAACTCCTCACAAGAGGCATCACAAGTTTATTGAATTTTATGACGTCAGAGCTGCAGAAGCAGCTCTTAAGTCATTGAACAGGAGTGACATAGCTGGTAAACGAATAAAGCTAGAACCTAGTCGGCCTGGAGGAGCTCGTAGAAATTTGATGCTCCAATTGAATCAAGAGCTTGACCAAGATGAATCTCGGCCTTTCCGATATCAAGTGGGTTCACCTGTAGCTAACTCTCCTCCAGGGAACTGGTTACAGTTTAACAGCCCTGTTGAGCAGAATTCTATGCAAAGTATCAATCATTCTCCTGTTTCCAGGATCCTCAGCCCAACAACAAGCAATCATTTACCTGGTCTAGCTTCAATTTTGCAACCACAAGCGTCTAACACGGTGAAGGCTGCTGCTATTGGCAATGACCTCGGAAGGAGCAGTCAAGGAGAGCACATATTTACTGGTTTGAATTCATCACACGGATCTAGTTTTCAATCACATTCACTTCCAGAGCCAAAATTCAGCCAGTATCGTGGAGCATTGTCCTCATTTGGTCCATCAACATCAAATGGATCCTCAGTAGAAACTTTATCTGGGCCACAGTTTCTATGGGGAAGCCCAACCCTCTACTCGGAGCATACAAAACCTTCAGCTTGGCCAAGATCATCTGTGGGGCATCCATTTACATCCAATGGGAAGAGCCATGCCTTCCCATACTCAAGTCAGAATAGCTCTTTTGTTGGTTCATCCCAGCATCATCACAATCATCACGTTGGCTCTGCACCATCAGGTTTGCCTTTTGAGAGGCACTTTGGTTTCCATCCTGAGTCATCTGAAACTTCATTCATGAATAATGTTGGTTATGGAGGCATGAATCTAGGGCACAATGATGGAAATTACATGGTTAATGTGGGGGGATCTGTTAATGCTAACATTACTATCCCAAGAAATATATCTGATAATGGTTCATCAAACTTCAGAATGAGATCTTCTCCTAGGCTTAGCCCCGTCTTCTTGGGAAATGGTCCTTATCCAGGACTTCCACCTACCACTTTGGAGGGTTTGGCTGATCGTGCTCGGAGTAGATGGATAGAGAACAATGTGAGCCAGGCTGACAGCAAGAAGCAATTTCAGCTTGAGTTGGATAAGATTAAAAGTGGTGAAGATATAAGGACTACATTAATGATAAAGAATATCCCAAACAAATACACCTCAAAAATGTTATTAGCTGCCATTGATGAAAATCACAGGGGTACTTATGATTTTCTCTATCTGCCAATTGACTTTAAGAATAAATGCAATGTGGGTTATGCATTTATCAACATGCTGTCACCCTCTCTTATCATTCCATTCTACGAGACATTCAACGGGAAGAAATGGGAGAAATTTAACAGTGAAAAAGTTGCTTCTTTGGCATATGCTCGAATTCAAGGAAAATCTGCCCTTGTGAGCCATTTTCAAAATTCAAGTTTGATGAATGAAGATAAGCGATGCCGCCCTATTCTTTTCCACTCAGAGGGTTCTGAAATTGGTGATCTGATTGTACAAGAACATCTTCCCTCCAACCCCAACAATCTAAACACTCAAGCACCAAGGTCAAGTGAGTTACATTCATGTGATTCTGCTGGGAGCCCTCCAAACGCAGGCCCTTCTGCAAGCTTGGATGCAAATTAA 2691 0.4244 MACNALTMMNSVQAVWSVEQLDMLACTLLLLKGDAMWQSFDPSSLGASKIPSIKIPGKSGNGTWEALSGSSSYHASSDASLFSSSLPVLPHEKLNLNETENGYQSVDDISSGFKKLHQDAEGNGSLEDGDAPAIGPVLPDDEDELLAGIMDDFDLSGLPGSLEDLEEYDLFGSGGGMELETDPQDSLTVGMSKLSFADSTVGNGLPHYSFPNGVGTVAGEHPYGEHPSRTLFVRNINSNVEDSELRALFELYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIPKDNPSDKDINQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSRPGGARRNLMLQLNQELDQDESRPFRYQVGSPVANSPPGNWLQFNSPVEQNSMQSINHSPVSRILSPTTSNHLPGLASILQPQASNTVKAAAIGNDLGRSSQGEHIFTGLNSSHGSSFQSHSLPEPKFSQYRGALSSFGPSTSNGSSVETLSGPQFLWGSPTLYSEHTKPSAWPRSSVGHPFTSNGKSHAFPYSSQNSSFVGSSQHHHNHHVGSAPSGLPFERHFGFHPESSETSFMNNVGYGGMNLGHNDGNYMVNVGGSVNANITIPRNISDNGSSNFRMRSSPRLSPVFLGNGPYPGLPPTTLEGLADRARSRWIENNVSQADSKKQFQLELDKIKSGEDIRTTLMIKNIPNKYTSKMLLAAIDENHRGTYDFLYLPIDFKNKCNVGYAFINMLSPSLIIPFYETFNGKKWEKFNSEKVASLAYARIQGKSALVSHFQNSSLMNEDKRCRPILFHSEGSEIGDLIVQEHLPSNPNNLNTQAPRSSELHSCDSAGSPPNAGPSASLDAN 896
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst9g02693 896 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 229 302 IPR000504 GO:0003723
Spst9g02693 896 Gene3D - 218 312 IPR012677 -
Spst9g02693 896 SMART rrm1_1 732 808 IPR000504 GO:0003723
Spst9g02693 896 SMART rrm1_1 230 298 IPR000504 GO:0003723
Spst9g02693 896 SMART rrm1_1 315 383 IPR000504 GO:0003723
Spst9g02693 896 CDD RRM2_MEI2_like 313 383 - -
Spst9g02693 896 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 231 295 IPR000504 GO:0003723
Spst9g02693 896 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 316 381 IPR000504 GO:0003723
Spst9g02693 896 MobiDBLite consensus disorder prediction 578 596 - -
Spst9g02693 896 Pfam RNA recognition motif 2 730 826 IPR007201 -
Spst9g02693 896 Gene3D - 313 409 IPR012677 -
Spst9g02693 896 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 314 387 IPR000504 GO:0003723
Spst9g02693 896 SUPERFAMILY RNA-binding domain, RBD 732 816 IPR035979 GO:0003676
Spst9g02693 896 FunFam Protein MEI2-like 1 313 408 - -
Spst9g02693 896 CDD RRM3_MEI2_like 733 818 IPR034454 -
Spst9g02693 896 MobiDBLite consensus disorder prediction 857 896 - -
Spst9g02693 896 FunFam MEI2-like protein 5 isoform 2 218 312 - -
Spst9g02693 896 SUPERFAMILY RNA-binding domain, RBD 226 389 IPR035979 GO:0003676
Spst9g02693 896 CDD RRM1_MEI2_like 228 304 IPR034453 -
Spst9g02693 896 MobiDBLite consensus disorder prediction 578 602 - -
Spst9g02693 896 PANTHER RNA RECOGNITION MOTIF-CONTAINING 77 872 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst9g02693 Spst-Chr9 60998779 61005874 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst9g02693 226 371 Eukaryotic Initiation Factors Gene Family AT1G71770 26.452 8.13e-10 60.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst9g02693 - - gmx:100800877 1602.42