Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst9g02688 ATGCCCATGCCCCCAGCTGCCGGAGCCGTCGCGTTGCACTCTTCCCTATTGTCCATGCCTTCTGAGAAACCATCTTCTCCTTTAAAATCAACCCTTCTTCATGTGGCTCCCAAACCCAAAAGCCTCCTCCAAAGCCACCCACTTTACCCCCCAACCCATGCCAAACTCTCCCTTGAATTCAAAGAGAAAATTCTCTGCCTTGAGGTGATGGGTGTTGATGCAGGCAAAGCACTCTCCCAAAACCCTGACCTCTGCACAGCGACCATGGAATCCATTCACTCCATAATCACCTTCCTTTTCTCCAATGGCATTCTAGAAAAGGACCTGCCCCGAATCTTTGGCATGTGCCCCCAGATTCTCACCTCTGACATCAAAACTGATCTCACCCCAGTTTTTGATTTCATCTTGAATGAACTCAAAGTCCCCGAACATAGCTTCAGAAGGGTGGTCAACAAGTGCCCAAGATTGCTTACATCCAGTGTGAAAGACCAGCTTAGGCCAGCTTTGGTTTACCTAAGGAGACTTGGATTCAGGGATTTGGGGGCCTTGGCTTATCAAGATTCTGTTCTCTTAGTGTCTAGTGTAGAACACACCCTCATCCCTAAACTGAGGTTTTTAGAGAGTTTGGGACTTTCCAAGGATGAGGTTAGGAGCATGGTGTTGAGATGTCCAGCACTGCTTACTTTCAGTATAGAAAATAATTTTCAGCCAAAGTATGAGTATTTTGCTGGGGAAATGGGTAGAAAATTGGAGGAGCTAAAAGAATTTCCTCAGTACTTTGCTTTTAGTTTGGAGAATAGGATAAAACCTAGACACATGGAGGTTGTGCAAAGTGGAATCACTGTACCTTTACCAGTGATGCTTAAAAGCACTGATGAAGAATTTAGGGAGCTGGTAAAGCAAGGGGGTGGGTGA 915 0.459 MPMPPAAGAVALHSSLLSMPSEKPSSPLKSTLLHVAPKPKSLLQSHPLYPPTHAKLSLEFKEKILCLEVMGVDAGKALSQNPDLCTATMESIHSIITFLFSNGILEKDLPRIFGMCPQILTSDIKTDLTPVFDFILNELKVPEHSFRRVVNKCPRLLTSSVKDQLRPALVYLRRLGFRDLGALAYQDSVLLVSSVEHTLIPKLRFLESLGLSKDEVRSMVLRCPALLTFSIENNFQPKYEYFAGEMGRKLEELKEFPQYFAFSLENRIKPRHMEVVQSGITVPLPVMLKSTDEEFRELVKQGGG 304
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst9g02688 304 FunFam Transcription termination factor MTEF1, chloroplastic 135 302 - -
Spst9g02688 304 Gene3D Transcription termination factor 3, mitochondrial 135 301 IPR038538 -
Spst9g02688 304 SMART mt_12 147 178 IPR003690 GO:0003690|GO:0006355
Spst9g02688 304 SMART mt_12 75 105 IPR003690 GO:0003690|GO:0006355
Spst9g02688 304 SMART mt_12 110 142 IPR003690 GO:0003690|GO:0006355
Spst9g02688 304 SMART mt_12 250 281 IPR003690 GO:0003690|GO:0006355
Spst9g02688 304 SMART mt_12 181 212 IPR003690 GO:0003690|GO:0006355
Spst9g02688 304 SMART mt_12 217 249 IPR003690 GO:0003690|GO:0006355
Spst9g02688 304 Pfam mTERF 190 295 IPR003690 GO:0003690|GO:0006355
Spst9g02688 304 Pfam mTERF 67 178 IPR003690 GO:0003690|GO:0006355
Spst9g02688 304 PANTHER CGI-12 PROTEIN-RELATED 28 299 IPR003690 GO:0003690|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst9g02688 Spst-Chr9 60960810 60961724 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Spst9g02688 mTERF 8.9e-30 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst9g02688 K15031 - gmx:100788221 536.569
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst9g02688 9 60960810 60961724 Spst9g02688 9 60960810 60961724 ECH