Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst9g02683 ATGGGGAAGAACAAGACGCAGGTGGGAGAAACGAGCGAAGATAGAGGAGATGGTAAGAAAGCTGAAGATAATAGGCCCAGTTCATATGACAATGATAACTTAATGTTTATATCAATGGCTCAAGAGTTGAAGGATGAAGGGAACAAGCTGTTCCAGAAGCGGGATGTTAAAGGGGCTTTGGTAAAATATGAGAAGGCCCTCCAATTGCTTCCAAGAAATCATGTAGATATTTCTTATCTGAGGAGTAACATGGCTGCGTGCTACATGCAGATGGGTCTCCGTGAGTATCCTAGAGCGATCAATGAATGCAATTTGGCTCTTGAAGTATCACCAAGGTATAGTAAAGCTCTGATGAAGAGGGCAAGGTGCTATGAAGCTTTAAATAGGCTGGATTTCGCCCTGAGAGATGTTAGTACTGTCTTAAAGATAGAGCCAAATAATGTCATGGCATTAGAGGTCTCGGATAAGGTGAAGCATGCTCTTGAAGATCGGGGATTAGTAGTAAATAATGCAGAAATTGAGTTGCCTCCAGATTATGTTGAACCTCCTACTATGCCTCTGGCAAAAGTAGTGAAAGAAAAGACTCACAAGAAGAAGAAAAAGAAAGAGAAGGTGAAGCCTCCTGATAAAATTGAAGAGAAGCAAGCTGAGGAGAAATTACAAGAGAAGAAAGCTGACGACAGCAGTGTAGTGAAGAAGGCCGAGGACAGTCGGAAAGAGAAGAAGGCTAATAAGTCTAAAAAGAAGAAGGCCAAGGAAAAAAATGTTGGGAAAAAGGACGATGATGTTAAGGAAGTTATTGAGGAAAAAAGTAATTGTAGAAGTGAAGATATACCTAAGAAAGCAGCAAAACTTATTTTTGGTGAGGACATAAGATGGGCTGAATTACCAGTTAATTGCAGCCTCTTTCAGCTAAGGGAAGTCATTTGTGATCGTTTCCCTAGACTAGGAGCAGTTGTTGTCAAATATAGGGACCAAGAGGGTGATCTGCTCACTATCACTTCTGATGAAGAATTAAGGTGGGCTGAAACAGGATCAGAGGGTTCTATTCGGCTGTACATAGTGGAAGTTAATCCTGAACATGATCCATTCTTTAGGAGGCTTAATGCAAATAATGGAGAAAAGGTTAGCATTGCTAGTTCTCCTGTGAATGGGTCTGTGGTGAAAGCAAAGGACATTATTCACTCATCTTGCATTGAGGATTGGATAATTCAGTTTGCACAACTGTTCAAGAATCATGTTGGGTTGGAATCTGACGGATATTTAGATTTTCATGAATTTGGTATGAAACTCTATTCAGAGGCTGTGGAGGAGACAATTACAACTGAGGAAGCTCAAGTCGCATTTGATGTTGCTGAAAGTAAGTTCCAAGAGATGGCGGCTCTAGCATTGTTCAACTGGGGAAATGTGCATATCTCCAGGGCAAGGAAGAAAGTGTATTTTACTGGAGATTCTTCTAAGGAGCATATGCATGAACAAATAAAAAGTTTGTTTAAATGGGCGCAAGAAGAATATGAAATAGCTGGGGATAAGTATGAAACAGCTATTGAAATTAAACCAGATTTTTATGAAGGCTTCCTGGCACTAGGCCTGGTGCTGTTTGAGCAAGCAAAACTTTCTTGGAATTATGCTCTCTGTTCTAAGGTAGATTTCTCTACATGGCCTGCTACTGAGGTTCTTCAGCTTTACAATAGTGCCGAGTATAGTGTGGAGAAAGGAATGCTTATATGGGAAGAATCAGGAGAGAAGCACTTGCGGGAAGGTTACCGTCACAAGGATATTTTATTACATTTGCAGAACCTGGGGTTGGAGAAGCTATTCAAAAATATGTCAGCAGATGAAATTTCTACACAGGTGGAAAATACGAGGTCTCAAATAAATCTTCTGTGGGGTACCATACTATATGAATGCTCGACAGTGGAATTCAAATTAGGCCTGCCAGAATGGAATGAATGTCTGGAAGTTGCAGCTGAGAAGTTTCAACTTGCTGGAGCTTCTGCAACAGATATAGCTGCAATGTTGAAGAACCACTGTTCAAATAACAATGTTGTAGATGGTCTTGAATTTAAAGTTGATGAAATAGTCCAAGGATGGAATGAGATGTACAAAGCTAAAATGTTGCAGAAAGGTGTTCCATCATTTCGTTTGGAGCCCTTGTTTAGAAGAAGAATATCTAAAATTTACCATGCCTTTGAGCTTGTATGA 2205 0.4023 MGKNKTQVGETSEDRGDGKKAEDNRPSSYDNDNLMFISMAQELKDEGNKLFQKRDVKGALVKYEKALQLLPRNHVDISYLRSNMAACYMQMGLREYPRAINECNLALEVSPRYSKALMKRARCYEALNRLDFALRDVSTVLKIEPNNVMALEVSDKVKHALEDRGLVVNNAEIELPPDYVEPPTMPLAKVVKEKTHKKKKKKEKVKPPDKIEEKQAEEKLQEKKADDSSVVKKAEDSRKEKKANKSKKKKAKEKNVGKKDDDVKEVIEEKSNCRSEDIPKKAAKLIFGEDIRWAELPVNCSLFQLREVICDRFPRLGAVVVKYRDQEGDLLTITSDEELRWAETGSEGSIRLYIVEVNPEHDPFFRRLNANNGEKVSIASSPVNGSVVKAKDIIHSSCIEDWIIQFAQLFKNHVGLESDGYLDFHEFGMKLYSEAVEETITTEEAQVAFDVAESKFQEMAALALFNWGNVHISRARKKVYFTGDSSKEHMHEQIKSLFKWAQEEYEIAGDKYETAIEIKPDFYEGFLALGLVLFEQAKLSWNYALCSKVDFSTWPATEVLQLYNSAEYSVEKGMLIWEESGEKHLREGYRHKDILLHLQNLGLEKLFKNMSADEISTQVENTRSQINLLWGTILYECSTVEFKLGLPEWNECLEVAAEKFQLAGASATDIAAMLKNHCSNNNVVDGLEFKVDEIVQGWNEMYKAKMLQKGVPSFRLEPLFRRRISKIYHAFELV 734
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst9g02683 734 CDD PB1 284 354 - -
Spst9g02683 734 SUPERFAMILY TPR-like 40 538 IPR011990 GO:0005515
Spst9g02683 734 Coils Coil 231 254 - -
Spst9g02683 734 MobiDBLite consensus disorder prediction 1 31 - -
Spst9g02683 734 PANTHER PROTEIN CLMP1 4 732 IPR044517 -
Spst9g02683 734 Gene3D - 280 356 - -
Spst9g02683 734 ProSiteProfiles TPR repeat profile. 114 147 IPR019734 GO:0005515
Spst9g02683 734 SMART PB1_new 280 357 IPR000270 GO:0005515
Spst9g02683 734 SMART tpr_5 114 147 IPR019734 GO:0005515
Spst9g02683 734 SMART tpr_5 78 113 IPR019734 GO:0005515
Spst9g02683 734 SMART tpr_5 40 73 IPR019734 GO:0005515
Spst9g02683 734 Gene3D Tetratricopeptide repeat domain 37 165 IPR011990 GO:0005515
Spst9g02683 734 ProSiteProfiles TPR repeat profile. 40 73 IPR019734 GO:0005515
Spst9g02683 734 SUPERFAMILY CAD & PB1 domains 283 369 - -
Spst9g02683 734 MobiDBLite consensus disorder prediction 205 242 - -
Spst9g02683 734 Pfam PB1 domain 284 355 IPR000270 GO:0005515
Spst9g02683 734 MobiDBLite consensus disorder prediction 8 27 - -
Spst9g02683 734 MobiDBLite consensus disorder prediction 190 262 - -
Spst9g02683 734 ProSiteProfiles PB1 domain profile. 280 357 IPR000270 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst9g02683 Spst-Chr9 60909119 60911400 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst9g02683 23 147 Calmodulin-binding Proteins AT3G25230 31.655 1.61e-08 55.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst9g02683 K26538 - gmx:100820306 1110.52
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst9g02683 9 60909119 60911400 Spst9g02683 9 60909119 60911400 ECH
Spst3g05020 3 102024917 102027203 Spst9g02683 9 60909119 60911400 PCT