Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst9g02673 ATGAAGCAGCATGTGGAGGTGTTCCCTGACCAAATGGACAGATTCATCCTTGTTCACTCGGTAAATTTGGGAATGTGCACTGTGTTACAAGACCGTCTTAGGCGCCTTCTTGAAGCAGTACCTTCCAGAGCCCGGCAGCATCAGGATCGGCCGCCCGTTGGCCCTGCGATCCAAATAAGCAACCCCACTGAAGAAACTGTTGTGGGGACTGAGGCTCAAGTTGAAGGAATTGAGCACCAGAGAGTTGAGGAAAGAGTAGATGGAAGTGCGAAACGGCGCATAATGAAAGGGGTGCATCTAATAGCTAAAGCATTGGAGGATGTGGAAGTAGGTACTCGTAAGCATGGAACAGGCAGCGGAAATTTTTTTGAGTGCAACATATGCTTGCGCATAGCAAAAGATCCTGTATTGACTTGCTGTGGCCACCTGTTTTGCTGGACATGCTTTTATCGCTTGCCGTATTCCTATGGAGATGCAAAGGAGTGCCCTGCTTGTGATGGAGAGGTCATTGACACTAACATTACTCCAATTTATGGCAATGCGAGTGGCAGTGGCAATTCTGATGCAGCTTGTTCGACAGTTCCTCCTCGCCCTGCTGCAAACAGAATTAATAGGTTTAGCTAA 624 0.4808 MKQHVEVFPDQMDRFILVHSVNLGMCTVLQDRLRRLLEAVPSRARQHQDRPPVGPAIQISNPTEETVVGTEAQVEGIEHQRVEERVDGSAKRRIMKGVHLIAKALEDVEVGTRKHGTGSGNFFECNICLRIAKDPVLTCCGHLFCWTCFYRLPYSYGDAKECPACDGEVIDTNITPIYGNASGSGNSDAACSTVPPRPAANRINRFS 207
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst9g02673 207 ProSiteProfiles Zinc finger RING-type profile. 125 166 IPR001841 -
Spst9g02673 207 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 91 202 IPR045103 GO:0005783|GO:0006511|GO:0061630
Spst9g02673 207 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 109 193 IPR013083 -
Spst9g02673 207 SUPERFAMILY RING/U-box 121 175 - -
Spst9g02673 207 Pfam zinc-RING finger domain 124 166 IPR001841 -
Spst9g02673 207 SMART ring_2 125 165 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst9g02673 Spst-Chr9 60808114 60809828 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst9g02673 107 203 C3H Transcription Factor Family AT3G58030 48.980 3.13e-27 105
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst9g02673 - - pvu:PHAVU_009G211500g 271.937