Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst9g02655 ATGGCTGGAATGCTTCCAGGAGTTGAATGTGCAAGAAGGAGAAGGTTCCACAGATGCTTGGATTCAAACTCAACTTTTATAGCTTCATATGTGTCCACAAGACGTTCTTCTTTTGGTTTGTATGCAGGTAGTAGTCATGAATGTCGTCTTTCTTCATCCACTTCACAGCCAAGAAACATGTTATACCAGACACACCCGGATGAGGATATAGTAGGAGCAGCCAGAGAAGCCAGACAGAGATTGGATGACAAGTTTAGAGCCCAAAGGATGCCAGAAAACAAAAGGCAAAACAGCACAGCATGTGTGGAAGGCAGAAGAAAAAACATAACAGAGTTGCACACAGAGGTATATGGGTCAAAGAAAAGTGGTGCAAGAAAATTCAGTTGGACTAGATGGAGCTGGAAAGCCTCTGAACAAGAGGACTGTGCCGTGTGCTTGGAATCATTCAGGGTTGGAGAGACTCTGATCCATCTTCCTTGTGCACATAAGTTTCATGACAGATGCTTGAAACCATGGTTGGAAAATAACTCTCATTGTCCATGTTGCAGAACAACCATTCTTTCCCTCTAG 570 0.4351 MAGMLPGVECARRRRFHRCLDSNSTFIASYVSTRRSSFGLYAGSSHECRLSSSTSQPRNMLYQTHPDEDIVGAAREARQRLDDKFRAQRMPENKRQNSTACVEGRRKNITELHTEVYGSKKSGARKFSWTRWSWKASEQEDCAVCLESFRVGETLIHLPCAHKFHDRCLKPWLENNSHCPCCRTTILSL 189
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst9g02655 189 ProSiteProfiles Zinc finger RING-type profile. 142 183 IPR001841 -
Spst9g02655 189 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 106 188 IPR013083 -
Spst9g02655 189 PANTHER SI:CH211-59O9.10 108 187 - -
Spst9g02655 189 SUPERFAMILY RING/U-box 129 187 - -
Spst9g02655 189 FunFam Zinc finger family protein 116 188 - -
Spst9g02655 189 SMART ring_2 142 182 IPR001841 -
Spst9g02655 189 Pfam Ring finger domain 141 183 IPR001841 -
Spst9g02655 189 CDD RING-H2_PA-TM-RING 141 183 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst9g02655 Spst-Chr9 60632701 60634224 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst9g02655 1 86 C3H Transcription Factor Family AT2G15580 48.421 2.72e-18 74.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst9g02655 - - gmx:100527583 328.946
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst9g02655 9 60632701 60634224 Spst9g02655 9 60632701 60634224 ECH