Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst9g02652 ATGGCTTTCCACGACCATCTGGCGCACGAAATCACGTTCCAGCCGTTCACGGAGGAGCAGCAGATGGGTCAGGGCAGAGACATGCAGCGGCTGCTTCCGCTCTCCGGCGGAGCGCCGACGTGGCTTAGCGGCAGCAACGCGGCGACGCTCCGGCAGCAGAATTTCCTCCACCTGCAGCCGGAGTCGGCGACCGCGCAGCCAAACGACGACGTTCGGGGAGGCATGGATCGGAACCGGACGGAGAGCAACTCGGAACCGGACGACTTGGCGGAATACAAAGCAGACATTCTGGGACACCCGCTTTACGATCAGCTCCTATCAGCTCACGTCTCGTGTCTGAGGATCGCCACGCCCGTTGACCAGCTTCCACGGATCGACGCGCAGCTTCAGCAGTCGCAGCGCGTCGTTGACAAGTACTCTAGCCTCGGAAACGGCGTTGTCGACGACAAAGAGCTTGATCAATTCATGTCGCATTATGTTATACTTCTCTGTGCTTTTAAAGAACAATTGCAACAACATGTCCGCGTTCATGCCATGGAAGCTGTTATGGCTTGTTGGGAGCTGGAGCAATCTCTACAAACCTTGACTGGTGTATCTCCCGGGGAAGGAACGGGTGCAACTATGTCCGACGATGAAGAAGACCAGGCTGAGAGTAATGCCAACTTATACGAAGGAAGCATGGATGGCGCTGATAGTCTCAGTTTTGGACCTCTTGTTCCCACTGAGACTGAAAGATCTTTGATGGAGCGTGTGAGGCAGGAGTTGAAGCATGAGCTAAAACAGGGTTACAAGGAGAAGATTGTGGACATAAGAGAGGAAATTCTACGAAAGAGAAGAGCGGGGAAGCTCCCAGGTGACACCACTTCCCTTTTAAAAGCTTGGTGGCAGTCACATTCCAAATGGCCATATCCAACTGAAGAAGACAAGGCAAGGTTGGTGCAGGAAACAGGCTTGCAACTAAAGCAGATAAATAACTGGTTCATAAATCAAAGGAAAAGGAATTGGCATACTAATCCTTCTTCTTCTAGTGGCTCCAAAAGCAAACGCAAGAGGTGA 1056 0.5237 MAFHDHLAHEITFQPFTEEQQMGQGRDMQRLLPLSGGAPTWLSGSNAATLRQQNFLHLQPESATAQPNDDVRGGMDRNRTESNSEPDDLAEYKADILGHPLYDQLLSAHVSCLRIATPVDQLPRIDAQLQQSQRVVDKYSSLGNGVVDDKELDQFMSHYVILLCAFKEQLQQHVRVHAMEAVMACWELEQSLQTLTGVSPGEGTGATMSDDEEDQAESNANLYEGSMDGADSLSFGPLVPTETERSLMERVRQELKHELKQGYKEKIVDIREEILRKRRAGKLPGDTTSLLKAWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHTNPSSSSGSKSKRKR 351
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst9g02652 351 SMART KNOX1_2 90 134 IPR005540 GO:0003677|GO:0005634
Spst9g02652 351 SMART HOX_1 276 341 IPR001356 GO:0003677
Spst9g02652 351 MobiDBLite consensus disorder prediction 198 217 - -
Spst9g02652 351 MobiDBLite consensus disorder prediction 72 87 - -
Spst9g02652 351 ProSiteProfiles ELK domain profile. 254 274 IPR005539 GO:0003677
Spst9g02652 351 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 115 339 - -
Spst9g02652 351 Gene3D - 273 349 - -
Spst9g02652 351 SMART KNOX2_2 142 197 IPR005541 GO:0003677|GO:0005634
Spst9g02652 351 MobiDBLite consensus disorder prediction 331 351 - -
Spst9g02652 351 Pfam ELK domain 254 275 IPR005539 GO:0003677
Spst9g02652 351 SUPERFAMILY Homeodomain-like 276 340 IPR009057 -
Spst9g02652 351 SMART ELK_2 254 275 IPR005539 GO:0003677
Spst9g02652 351 Pfam KNOX2 domain 146 196 IPR005541 GO:0003677|GO:0005634
Spst9g02652 351 ProSiteProfiles 'Homeobox' domain profile. 274 337 IPR001356 GO:0003677
Spst9g02652 351 FunFam homeobox protein knotted-1-like 3 isoform X1 275 336 - -
Spst9g02652 351 CDD homeodomain 277 338 IPR001356 GO:0003677
Spst9g02652 351 MobiDBLite consensus disorder prediction 59 87 - -
Spst9g02652 351 Pfam KNOX1 domain 92 133 IPR005540 GO:0003677|GO:0005634
Spst9g02652 351 Pfam Homeobox KN domain 294 333 IPR008422 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst9g02652 Spst-Chr9 60594539 60599389 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst9g02652 41 351 Homeobox Transcription Factor Family AT5G25220 70.958 8.01e-165 465
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Spst9g02652 KNOX2 2.5e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst9g02652 - - gmx:100816347 654.055
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst9g02652 9 60594539 60599389 Spst9g02652 9 60594539 60599389 ECH
Spst3g05046 3 102224358 102229211 Spst9g02652 9 60594539 60599389 PCT