Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst9g02640 ATGCAACAAAACAAAAAATATGCACAATCTTCTTTTATTCTGACACCATTGCCTTTGCCTTTGCTTAGGGTACATACAATTGTCCCTCTCCCTTGTGCTCTCCAAGTTCCAATGGAGATTTTCAAATGCTTCTACATCAATCTTCTTCTTGCTTTCATGTTATCAGCAGTTTTAGCAATCGACCCTTACTCAGGGGCACTCCTTAGCCTAAAATCTGAACTTGTAGATGATGATAACAGCTTGCACGACTGGGTGGTGCCCTCGGGAGGAAAATTAAATGGGAAATACTATGCGTGTTCTTGGTCAGGTATCATGTGTAACAATGACTCAACCGTTGTAACTTCTATAGACCTTTCCATGAAGAAACTGGCAGGTATATTGTCAGGGAAGCAATTCAGCATCTTCACAAACCTCACTAATCTCAACCTGAGCTACAATTTCTTCTCTGGACAGCTTCCAGCGGAGATTTTCAACCTCACCAGCCTAACAAGCTTGGACATAAGCAGAAACAACTTTTCTGGTTCCTTCCCTGGTGGAATTCCCAGACTCCAAAATTTGGTTGTACTTGATGCCTTTAGCAACAGTTTTTCAGGGCAATTGCCTGCTGAATTTTCACAGCTTGCATACCTTAAAGTTCTCAATCTAGCTGGGAGCTACTTCAGAGGGTCAATTCCATCTGCATATGGTTCTTTCAAAAGCCTTCAGTTTCTTCATCTTGCAGGAAATTCTCTTTCAGGAAGTATACCTCCAGAACTGGGTAACCTCAAAACAGTGACCCATATGGAGATTGGCTACAATCTATACCAGAGTTTTATTCCACCCGAACTAGGCAACATGAGTCAGCTTCAGTATCTTGACATAGCAGAAGCAAATCTATCTGGCCCCATACCAAAGCAACTCTCCAACCTCACCAGTTTGCAATCGCTTTTCCTGTTCAGAAACAAGCTCACAGGATCAGTACCAAGTGAGCTCAGTCACATAGAATCTCTCACAGATTTAGATCTCTCTGATAACGTCCTCTCAGGGTCCATTCCTGAAAGCTTCTCAGAGCTAGAGAACCTAAGACTGCTCAGTCTTATGTACAATGACATGAGTGGCACTGTTCCTGAAGGCATTGCGCAACTCCCATCCTTGGAAACTCTTCTCATTTGGAATAACCGCTTCTCTGGGTCACTTCCACAGAGCTTAGGGAGGAACTCCAAACTCAAGTGGGTGGATGCTTCCACGAACAATTTAGTTGGCACCATACCACCAGACATCTGTGTGAGTGGAGAACTATTTAAACTAATGCTGTTTTCAAACAACTTCACAGGTGATCTTTCGTCAATCTCCAATTGTTCTTCCCTCGTTCGCCTTCGCCTAGAAGATAATTCCTTTTCCGGAGAAATCACTTTGAAATTCAGCCATCTTCCTGGTATCGTATACGTTGATCTCTCCAGGAACAACTTTGATGGTGGCATTCCCTCAGATATTTCTCAAGCCACTCAACTGGAGTATTTTAACGTGTCTTATAATATGCAATTAGGAGGTACCATTCCGGCACAAACGTGGTCTTTGCCCCAACTTCAAAATTTTTCGGCATCTTCTTGTGGTATTTCTGGTGATCTTCCCCTATTTGAACCCTGCAAATCAATTTCAGTTATTGATCTAGATAGCAATAACTTATCTGGAATCATCCCAAACAGTGCTTCCAAATGTCAAGCTCTTGAGAAAATCAAACTATCCAACAATAATTTAACAGGTCATATACCTGATGAGCTTGCAAGTATTCCTGTTCTCGGTGTAGTGGACCTATCAAACAACAAGTTCAATGGCCCCATACCTGCGAAGTTTGGAAGTTGTTCAAGTTTACAACTTCTGAATGTGTCTTTCAACAATATCTCTGGTTTAATACCCAAAGCAAAGTCATTCAAATTGATGGGAAGAAGTGCATTTATTGGAAATTCAGAGCTATGTGGAGCACCCCTGAGACCATGTCCTGATTCAGTTGGGATATTGGGCGGCAGCAAAGGCACGTGGAAGATTACACGTATTGTGCTACTCTCTGTAGGGCTGCTAATAGTTCTTCTGGGACTTACTTTTGGAATATTTTATTTGAGAAGAGGGATAAAAAGTCAATGGAAGATGGTCTCATACGAGGGTCTCCCTCAATTCACGGCAAATGATGTTTTGACAAGCCTCAATGCCACAAAACCAACAGAAGTTCCATCACCATCACCAGCAGTTACAAAGGCTGTTCTGCCTACAGGAATAACAGTTTTGGTCAAGAAGATTGAATGGGAAGCGAGGAGCATCAAGGTTGTGTCAGAATTTATAATGAGACTGGGAAATTCAAGGCACAAGAATTTAATCAGACTACTGGGGTTTTGCCACAACCAGCACTTAGTCTATCTTTTGTATGATTACTTGCCCAATGGGAATTTGGCTGAGAAAATGGAAATGAAATGGGATTGGGCAGCAAAATTCAGTACAGTGGTTGGAATTGCAAGGGGACTCTGCTTTCTTCACCATGAATGTTACCCAGCAATACCCCATGGAGACTTGAAGCCTAGCAACATTGTATTTGACGAAAATATGGAACCCCATTTGGCAGAATTTGGATTCAAACAAGTGTTCAGGTTGAGCAAAGGCTCATCACCCACCACAACAACTAAGTGGGAAGCAGAATACGATGTGGCCACGAAAGAGGAACTGTGCATGGATATCTACAAATTTGGGGAGATTATTCTGGAAATTTTAAGTGCCGGAAGGTTGACAAATGCAGGAGCCAGCATACACAGCAAACCATGGGAGGTTCTCTTGAGAGAAATTTACAACGAGAATGAAGCAAGCTCCGCAAGTTCATTGCAAGAGATTAAACTGGTTCTTGAGGTTGCTATGCTTTGCACCAGAAGCAAGTCATCAGACCAGCCATCCATGGAAGATGTTCTCAAGCTTCTATCAGGGCTAAAGCATCTAGATGATGACAGAACTTCGAAAGAAGGGCAATAA 2991 0.4236 MQQNKKYAQSSFILTPLPLPLLRVHTIVPLPCALQVPMEIFKCFYINLLLAFMLSAVLAIDPYSGALLSLKSELVDDDNSLHDWVVPSGGKLNGKYYACSWSGIMCNNDSTVVTSIDLSMKKLAGILSGKQFSIFTNLTNLNLSYNFFSGQLPAEIFNLTSLTSLDISRNNFSGSFPGGIPRLQNLVVLDAFSNSFSGQLPAEFSQLAYLKVLNLAGSYFRGSIPSAYGSFKSLQFLHLAGNSLSGSIPPELGNLKTVTHMEIGYNLYQSFIPPELGNMSQLQYLDIAEANLSGPIPKQLSNLTSLQSLFLFRNKLTGSVPSELSHIESLTDLDLSDNVLSGSIPESFSELENLRLLSLMYNDMSGTVPEGIAQLPSLETLLIWNNRFSGSLPQSLGRNSKLKWVDASTNNLVGTIPPDICVSGELFKLMLFSNNFTGDLSSISNCSSLVRLRLEDNSFSGEITLKFSHLPGIVYVDLSRNNFDGGIPSDISQATQLEYFNVSYNMQLGGTIPAQTWSLPQLQNFSASSCGISGDLPLFEPCKSISVIDLDSNNLSGIIPNSASKCQALEKIKLSNNNLTGHIPDELASIPVLGVVDLSNNKFNGPIPAKFGSCSSLQLLNVSFNNISGLIPKAKSFKLMGRSAFIGNSELCGAPLRPCPDSVGILGGSKGTWKITRIVLLSVGLLIVLLGLTFGIFYLRRGIKSQWKMVSYEGLPQFTANDVLTSLNATKPTEVPSPSPAVTKAVLPTGITVLVKKIEWEARSIKVVSEFIMRLGNSRHKNLIRLLGFCHNQHLVYLLYDYLPNGNLAEKMEMKWDWAAKFSTVVGIARGLCFLHHECYPAIPHGDLKPSNIVFDENMEPHLAEFGFKQVFRLSKGSSPTTTTKWEAEYDVATKEELCMDIYKFGEIILEILSAGRLTNAGASIHSKPWEVLLREIYNENEASSASSLQEIKLVLEVAMLCTRSKSSDQPSMEDVLKLLSGLKHLDDDRTSKEGQ 996
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst9g02640 996 ProSiteProfiles Protein kinase domain profile. 709 983 IPR000719 GO:0004672|GO:0005524|GO:0006468
Spst9g02640 996 SMART LRR_typ_2 303 326 IPR003591 -
Spst9g02640 996 SMART LRR_typ_2 135 159 IPR003591 -
Spst9g02640 996 SMART LRR_typ_2 231 255 IPR003591 -
Spst9g02640 996 SMART LRR_typ_2 327 350 IPR003591 -
Spst9g02640 996 SMART LRR_typ_2 375 399 IPR003591 -
Spst9g02640 996 Gene3D Ribonuclease Inhibitor 541 659 IPR032675 -
Spst9g02640 996 FunFam Leucine-rich repeat receptor-like protein kinase TDR 348 661 - -
Spst9g02640 996 FunFam Leucine-rich repeat receptor-like protein kinase TDR 718 802 - -
Spst9g02640 996 SUPERFAMILY Protein kinase-like (PK-like) 742 985 IPR011009 -
Spst9g02640 996 SMART serkin_6 742 973 IPR000719 GO:0004672|GO:0005524|GO:0006468
Spst9g02640 996 FunFam Leucine-rich repeat receptor-like protein kinase TDR 225 329 - -
Spst9g02640 996 FunFam Leucine-rich repeat receptor-like protein kinase 63 224 - -
Spst9g02640 996 Gene3D Ribonuclease Inhibitor 319 421 IPR032675 -
Spst9g02640 996 Gene3D Transferase(Phosphotransferase) domain 1 801 995 - -
Spst9g02640 996 Gene3D Ribonuclease Inhibitor 63 217 IPR032675 -
Spst9g02640 996 Gene3D Phosphorylase Kinase; domain 1 739 800 - -
Spst9g02640 996 FunFam Leucine-rich repeat receptor-like protein kinase TDR 803 988 - -
Spst9g02640 996 PANTHER UNNAMED PRODUCT 207 917 - -
Spst9g02640 996 Gene3D Ribonuclease Inhibitor 218 318 IPR032675 -
Spst9g02640 996 Gene3D Ribonuclease Inhibitor 422 540 IPR032675 -
Spst9g02640 996 Pfam Leucine rich repeat 305 363 IPR001611 GO:0005515
Spst9g02640 996 Pfam Leucine rich repeat 545 603 IPR001611 GO:0005515
Spst9g02640 996 Pfam Leucine rich repeat N-terminal domain 66 107 IPR013210 -
Spst9g02640 996 Pfam Protein kinase domain 742 920 IPR000719 GO:0004672|GO:0005524|GO:0006468
Spst9g02640 996 ProSitePatterns Serine/Threonine protein kinases active-site signature. 843 855 IPR008271 GO:0004672|GO:0006468
Spst9g02640 996 SUPERFAMILY RNI-like 115 438 - -
Spst9g02640 996 SUPERFAMILY L domain-like 344 657 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst9g02640 Spst-Chr9 60498014 60501413 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst9g02640 50 981 Receptor kinase-like Gene Family AT5G51350 54.131 0.0 948
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Spst9g02640 Pkinase 1.1e-16 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst9g02640 - - aprc:113852384 1684.08