Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst9g02631 ATGGCTGTGGAAAACCAAAGGGGTCATTTGGGGGATGAAGATGGGGGTAGTGACCGTTTTCCCGTGGGTATGCGTGTTCTGGCCGTGGATGACGACCCCATTTGTCTCAAAGTGTTGGAGACTTTGCTTCGCAAATGCCAGTATCAGGTTACTACAACTAATCAGGCAGTTGAGGCACTGAAAATGTTGAGGGAAAACAGAAATAAGTTTGACCTCGTTATCAGCGATGTGAATATGCCTGACATGGATGGATTTAAGCTCCTTGAGTTGGTGGGACTTGAAATGGACCTACCTGTCATCATGTTGTCAGCACACAGTGATACAAAGCTGGTGATGCAGGGTGTTACGCATGGGGCATGTGACTATCTACTGAAACCTGTTCGAATTGAAGAGCTGAAGAACATTTGGCAACATGTAGTCCGTAGAAAGAATTTTGATTCCAGGGATCAGAACAAGGCTTCCAATGATGAAAAGGCTCTTAATACTGCTGGGGAAGGTAGTCCAAGCCTAAGATCAGAAAACAGTGGTGACCAGAATAAAAGACTTGGTAAAAAAAGGAAGGACCAAAGTGAGGAAGAAGAAGATGATGGGGAAGGGAATGGAGATGATGATGACCCCTCCGCACAGAAGAAACCTCGTGTTGTTTGGTCTGTCGAGTTGCATAGAAAATTTGTTGCTGCTGTTAATCAACTGGGCCTAGAAAAGGCTGTTCCCAAGAAAATACTTGACCTGATGAATGTTGAAGGGCTTACAAGGGAAAATGTGGCAAGCCATCTACAGAAGTATAGACTATATCTGAAAAAGGCAAACCATCAAGCTAACATGGTTGCTGCATTGGGTGGTAGTGATTCTTACCTACGAATGGGTTCAATAGATGGATATGGGGATTTTTGCACTGCATCTGGTTCTGGAAGGATCTCAAACACTACATTACCATCATATGCATCTTCTGGAATTTTCAGTAGACTGAATTCCCCAGCTGGCTTGAACATGCGAGGAATCAGTTCTCCTGCACTTATCCGGCCTGTTCAGACTCAAAACATCAACAGCTCCTTAAACACACTTGGAAACATTCAGCCATCCATTTTTTCTGCAAATCAGAGCTCAAGTTTGTTACAGGGCATTCCGACATCAATTGAGCTTAACCAATCTAAGCAAAGCAACTGTTCAACTGGAGTATCGCAGCTAAATCAAGTTGATTCAAGTGGATTTGCAGTTGCCTCTGGCTTCCCAGACAGTAGGGCTACAGTTAATGGTCCAAACAATTCTCTACCATGTGTCTCAAATAATCATCTGATTTTACAAGGAAATCCACAGCAAACACAGAGCCCAGGAGCATTTCGAAATCAGTCTTCTGTTAGAGCAGCTTCCTTGAGTGCAGAATCTTTTGGCATATGTGGTTCTTCTAATATGTTGGATTACAATCGGTGTAATGAAAACTGGCAGAATGCAGCTCAGTTGTCCAAATTTCAGGCCATTTCCTTGCCACTGTGTGAGGCTTTCAGCAATGACCAACTGTCTCCCACTAGCATCAATATTTCCAACTCAGGTACACATATTGGCAACACTCCGGTTGATTTTTCTTCCAGAATGGCAATGTCTGTTCCTTTGGAGGATGGCAGAAATGAGATCCGTTGCCAAGAAGGCTTGATTGGAAATATTATACAGCCTTCAAGCTATGCACCACAACAAAGGTGGGAAGAACAGAAATTGGATTATAATCAAAACCTGAGTCGACCCTTCAATCCTGTAAATTCACATGCTTCTTCCAGTGCAGCAACAAGTTCTATGGGGCATGGCTTAAATCAAAATAATGCAATTTGTAGCAATAGAATTGATGCATCTTTGGTTGGCCCGTGCACTGAAGTTGGGAAATTCTCTTCTGACATTCAACTGAAGTCGAATGAAGCCTACATTTTGGAACAATTAAAGTCCCAAGAAGGATTTATGCAGAATACTTTTGGGACCTTGGATGACATAATGGGTGCAATAGTCAAAAGGGAGCAAAATGAGTTGACATTGTTGGATGGAGAAATAGGATTTGATGCCTCCTACCCTGTTGGATCATGCAACTGA 2076 0.4287 MAVENQRGHLGDEDGGSDRFPVGMRVLAVDDDPICLKVLETLLRKCQYQVTTTNQAVEALKMLRENRNKFDLVISDVNMPDMDGFKLLELVGLEMDLPVIMLSAHSDTKLVMQGVTHGACDYLLKPVRIEELKNIWQHVVRRKNFDSRDQNKASNDEKALNTAGEGSPSLRSENSGDQNKRLGKKRKDQSEEEEDDGEGNGDDDDPSAQKKPRVVWSVELHRKFVAAVNQLGLEKAVPKKILDLMNVEGLTRENVASHLQKYRLYLKKANHQANMVAALGGSDSYLRMGSIDGYGDFCTASGSGRISNTTLPSYASSGIFSRLNSPAGLNMRGISSPALIRPVQTQNINSSLNTLGNIQPSIFSANQSSSLLQGIPTSIELNQSKQSNCSTGVSQLNQVDSSGFAVASGFPDSRATVNGPNNSLPCVSNNHLILQGNPQQTQSPGAFRNQSSVRAASLSAESFGICGSSNMLDYNRCNENWQNAAQLSKFQAISLPLCEAFSNDQLSPTSINISNSGTHIGNTPVDFSSRMAMSVPLEDGRNEIRCQEGLIGNIIQPSSYAPQQRWEEQKLDYNQNLSRPFNPVNSHASSSAATSSMGHGLNQNNAICSNRIDASLVGPCTEVGKFSSDIQLKSNEAYILEQLKSQEGFMQNTFGTLDDIMGAIVKREQNELTLLDGEIGFDASYPVGSCN 691
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst9g02631 691 SMART REC_2 24 136 IPR001789 GO:0000160
Spst9g02631 691 NCBIfam myb-like DNA-binding domain, SHAQKYF class 211 264 IPR006447 GO:0003677
Spst9g02631 691 MobiDBLite consensus disorder prediction 156 176 - -
Spst9g02631 691 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 208 267 IPR017930 -
Spst9g02631 691 Gene3D - 23 160 - -
Spst9g02631 691 ProSiteProfiles Response regulatory domain profile. 25 140 IPR001789 GO:0000160
Spst9g02631 691 SUPERFAMILY CheY-like 23 147 IPR011006 -
Spst9g02631 691 Pfam Myb-like DNA-binding domain 213 263 IPR001005 -
Spst9g02631 691 CDD REC_typeB_ARR-like 26 140 - -
Spst9g02631 691 PANTHER TWO-COMPONENT RESPONSE REGULATOR 24 384 IPR045279 GO:0009736
Spst9g02631 691 SUPERFAMILY Homeodomain-like 209 268 IPR009057 -
Spst9g02631 691 PIRSF RR_ARR_type-B 1 691 IPR017053 GO:0003677|GO:0003700|GO:0009736
Spst9g02631 691 Gene3D - 207 269 - -
Spst9g02631 691 MobiDBLite consensus disorder prediction 147 210 - -
Spst9g02631 691 FunFam Two-component response regulator 207 270 - -
Spst9g02631 691 FunFam Two-component response regulator 24 182 - -
Spst9g02631 691 MobiDBLite consensus disorder prediction 177 192 - -
Spst9g02631 691 Pfam Response regulator receiver domain 26 134 IPR001789 GO:0000160
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst9g02631 Spst-Chr9 60366137 60370325 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst9g02631 18 445 Response Regulator Gene Family AT2G25180 52.074 4.34e-129 393
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Spst9g02631 Response_reg 8.3e-26 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst9g02631 K14491 - gmx:100776075 1175.61