Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst9g02622 ATGCTCTCCTCCTGCTCCTGGCCTGACCTCAACCCAAACAAGCCCTTGTGGGACTCCAACCCCCCCAATGACCTCTCCGACGAAACCACGCCGACCAACAACGACACTAGCAATAATAATGTCGCTTTCCCCTACGACGAACCATCCACCTTGGCCTCCAAGTTCCGCAACCACCAGATCAGCGCCTCCAACACCAAAAACGCCGCCGCAGCTCTCATGCTCCAACACCAACTCCTCATGTCCAGAGACTCTCCCCTCCTTCACATCCCGCTTTCCTTACCTCAAAACGACGTCGTTGACGCCTCCTCTTTCAAATCCCCCAATCCCGGTGGTGAGACTTCAGTCCAGGCTCTCTACAACGGCTTCGCCGGATCTCTGCATGGCGCAGGTCAAGCCTCGAACCAGACTCAACATTTTCAACATCCTCAGGGAAGTTCGAATCCGATGCAGGGGCAAAATTTTGGTGGCGCAGGGAACCAAGCTCCGGCGAGTGGCGCGCCGGCTCAGCCGAGGCAGAGGGTTCGTGCAAGGAGAGGTCAAGCCACGGACCCACACAGCATCGCTGAAAGGTTGAGAAGGGAGAGAATCGCAGAGAGAATGAAGGCCCTACAGGAACTTGTTCCCAATGCCAACAAGACAGACAAGGCATCCATGCTAGATGAGATCATCGATTACGTGAAGTTCCTGCAGCTCCAAGTCAAGGTTCTGAGCATGAGCAGATTGGGCGGTGCAGCAGCTGTCGCACCCCTTGTTGCTGATATGTCATCTGAGGGAGGCGGTGACTGCATCCAAGCGAACTGCAACAGTAACGGCGGCGGGGCCCTCGGGCCGAACTCCAGCAGCAACAACAACCAAACGCCAGCGTCAACCTCAAATGACAGCCTCACCATGACGGAGCACCAGGTGGCGAAACTGATGGAGGAGGACATGGGTTCCGCCATGCAGTACCTTCAAGGCAAGGGCCTTTGCCTCATGCCCATTTCCCTGGCCACTGCCATCTCCACTGCCACGTGTCACACCAGGAACCCCTTGATCAATGCCGCCTCCGCCACCACCCAGGTTCCGACCGGCGCCGCCCCCGGCACCCACGCCAACCCCGCCGTGGCGACCAATGGCGAGGGCCCTTCGTCTCCGAGCATGTCCGTGCTGACCGTGCAGTCGGCCGTGGTTGGAAACGACGGCGCCGTCAAGGACGCTGCCTCCGTTTCGAAGCCGTGA 1218 0.587 MLSSCSWPDLNPNKPLWDSNPPNDLSDETTPTNNDTSNNNVAFPYDEPSTLASKFRNHQISASNTKNAAAALMLQHQLLMSRDSPLLHIPLSLPQNDVVDASSFKSPNPGGETSVQALYNGFAGSLHGAGQASNQTQHFQHPQGSSNPMQGQNFGGAGNQAPASGAPAQPRQRVRARRGQATDPHSIAERLRRERIAERMKALQELVPNANKTDKASMLDEIIDYVKFLQLQVKVLSMSRLGGAAAVAPLVADMSSEGGGDCIQANCNSNGGGALGPNSSSNNNQTPASTSNDSLTMTEHQVAKLMEEDMGSAMQYLQGKGLCLMPISLATAISTATCHTRNPLINAASATTQVPTGAAPGTHANPAVATNGEGPSSPSMSVLTVQSAVVGNDGAVKDAASVSKP 405
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst9g02622 405 Gene3D - 175 237 IPR036638 GO:0046983
Spst9g02622 405 MobiDBLite consensus disorder prediction 1 47 - -
Spst9g02622 405 SMART finulus 186 235 IPR011598 GO:0046983
Spst9g02622 405 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 180 229 IPR011598 GO:0046983
Spst9g02622 405 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 178 240 IPR036638 GO:0046983
Spst9g02622 405 MobiDBLite consensus disorder prediction 127 159 - -
Spst9g02622 405 MobiDBLite consensus disorder prediction 355 380 - -
Spst9g02622 405 Pfam Helix-loop-helix DNA-binding domain 185 230 IPR011598 GO:0046983
Spst9g02622 405 FunFam Transcription factor bHLH66 177 242 - -
Spst9g02622 405 MobiDBLite consensus disorder prediction 273 295 - -
Spst9g02622 405 MobiDBLite consensus disorder prediction 126 186 - -
Spst9g02622 405 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 59 333 - -
Spst9g02622 405 MobiDBLite consensus disorder prediction 16 47 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst9g02622 Spst-Chr9 60270864 60274021 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst9g02622 166 404 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G24260 63.281 1.50e-91 274
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Spst9g02622 HLH 1.5e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst9g02622 - - gmx:100807286 562.762