LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Spst9g02622	ATGCTCTCCTCCTGCTCCTGGCCTGACCTCAACCCAAACAAGCCCTTGTGGGACTCCAACCCCCCCAATGACCTCTCCGACGAAACCACGCCGACCAACAACGACACTAGCAATAATAATGTCGCTTTCCCCTACGACGAACCATCCACCTTGGCCTCCAAGTTCCGCAACCACCAGATCAGCGCCTCCAACACCAAAAACGCCGCCGCAGCTCTCATGCTCCAACACCAACTCCTCATGTCCAGAGACTCTCCCCTCCTTCACATCCCGCTTTCCTTACCTCAAAACGACGTCGTTGACGCCTCCTCTTTCAAATCCCCCAATCCCGGTGGTGAGACTTCAGTCCAGGCTCTCTACAACGGCTTCGCCGGATCTCTGCATGGCGCAGGTCAAGCCTCGAACCAGACTCAACATTTTCAACATCCTCAGGGAAGTTCGAATCCGATGCAGGGGCAAAATTTTGGTGGCGCAGGGAACCAAGCTCCGGCGAGTGGCGCGCCGGCTCAGCCGAGGCAGAGGGTTCGTGCAAGGAGAGGTCAAGCCACGGACCCACACAGCATCGCTGAAAGGTTGAGAAGGGAGAGAATCGCAGAGAGAATGAAGGCCCTACAGGAACTTGTTCCCAATGCCAACAAGACAGACAAGGCATCCATGCTAGATGAGATCATCGATTACGTGAAGTTCCTGCAGCTCCAAGTCAAGGTTCTGAGCATGAGCAGATTGGGCGGTGCAGCAGCTGTCGCACCCCTTGTTGCTGATATGTCATCTGAGGGAGGCGGTGACTGCATCCAAGCGAACTGCAACAGTAACGGCGGCGGGGCCCTCGGGCCGAACTCCAGCAGCAACAACAACCAAACGCCAGCGTCAACCTCAAATGACAGCCTCACCATGACGGAGCACCAGGTGGCGAAACTGATGGAGGAGGACATGGGTTCCGCCATGCAGTACCTTCAAGGCAAGGGCCTTTGCCTCATGCCCATTTCCCTGGCCACTGCCATCTCCACTGCCACGTGTCACACCAGGAACCCCTTGATCAATGCCGCCTCCGCCACCACCCAGGTTCCGACCGGCGCCGCCCCCGGCACCCACGCCAACCCCGCCGTGGCGACCAATGGCGAGGGCCCTTCGTCTCCGAGCATGTCCGTGCTGACCGTGCAGTCGGCCGTGGTTGGAAACGACGGCGCCGTCAAGGACGCTGCCTCCGTTTCGAAGCCGTGA	1218	0.587	MLSSCSWPDLNPNKPLWDSNPPNDLSDETTPTNNDTSNNNVAFPYDEPSTLASKFRNHQISASNTKNAAAALMLQHQLLMSRDSPLLHIPLSLPQNDVVDASSFKSPNPGGETSVQALYNGFAGSLHGAGQASNQTQHFQHPQGSSNPMQGQNFGGAGNQAPASGAPAQPRQRVRARRGQATDPHSIAERLRRERIAERMKALQELVPNANKTDKASMLDEIIDYVKFLQLQVKVLSMSRLGGAAAVAPLVADMSSEGGGDCIQANCNSNGGGALGPNSSSNNNQTPASTSNDSLTMTEHQVAKLMEEDMGSAMQYLQGKGLCLMPISLATAISTATCHTRNPLINAASATTQVPTGAAPGTHANPAVATNGEGPSSPSMSVLTVQSAVVGNDGAVKDAASVSKP	405

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Annotation information

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Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Spst9g02622	405	Gene3D	-	175	237	IPR036638	GO:0046983
Spst9g02622	405	MobiDBLite	consensus disorder prediction	1	47	-	-
Spst9g02622	405	SMART	finulus	186	235	IPR011598	GO:0046983
Spst9g02622	405	ProSiteProfiles	Myc-type, basic helix-loop-helix (bHLH) domain profile.	180	229	IPR011598	GO:0046983
Spst9g02622	405	SUPERFAMILY	HLH, helix-loop-helix DNA-binding domain	178	240	IPR036638	GO:0046983
Spst9g02622	405	MobiDBLite	consensus disorder prediction	127	159	-	-
Spst9g02622	405	MobiDBLite	consensus disorder prediction	355	380	-	-
Spst9g02622	405	Pfam	Helix-loop-helix DNA-binding domain	185	230	IPR011598	GO:0046983
Spst9g02622	405	FunFam	Transcription factor bHLH66	177	242	-	-
Spst9g02622	405	MobiDBLite	consensus disorder prediction	273	295	-	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Spst9g02622	Spst-Chr9	60270864	60274021	Dispersed/Wgd

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Spst9g02622	166	404	Basic Helix-Loop-Helix Transcription Factor Gene Family	AT2G24260	63.281	1.50e-91	274

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Transcription factors information

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Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	bHLH	Spst9g02622		HLH	1.5e-09	No_clan

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Spst9g02622	-		-	gmx:100807286	562.762

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