Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst9g02618 ATGGGTTTGGGAGTGTTCGGTTCCGTTCTAGTTCTAACACTCTTCTTCAAGCACTTAGCATCCCAGCAACCAAACACTGATGATTTCTTTGTTTCTGAGTTCTTGAAGAAGATAGGTTTAGCATCCTCCCAGGTCTACAACTTTTCTGTTTCTGTTTGTTCATGGCAAGGTGTTTCATGTGATGCCAAGAGAGAACATGTTGTTGGGTTAGTCTTTTCTGGCATGGGCCTTTCTGGTCCTATTCCAGACACCACCATAGGCAAGCTCGCCAAGCTTCGATCTTTGGACCTTAGCCACAACAAAATCACCGACTTGCCTCCTGATTTCTGGAGTTTTAGCATGCTTAAGAGCCTCAACCTCTCCTCCAATCATATTTCTGGTTCATTGACAAACAACATTGGCAACTTTGGTTTGCTAGAAGTGTTGGACTTGTCCAGCAACAATTTCTCTGGGGAAATTCCAGAAGCTATTAGTTCCCTCGTCAGTCTGAAAGTCATCAAACTTGACCACAACAGGTTTGAGCAAAGAATACCTTCTGGGATTCTCAAGTGCCGTTCTCTAGTTTCAATTGATCTTTCTTCAAATCAGCTAAGTGGGACAGTGCCGGATGGTTTCGGTACTGCTTTTCCTTATCTCAGTACCTTGAACCTTGCTGGGAATAGTATTAATGGCAGTGATTCTGATATTTCTGGGTTGAAGTCCATTGTGAGTCTCAACATATCTGGCAATTCCTTTCAGGGTTCTGTGATGAGGTTGTTTCAGGGAAGGCTTGAGGTCATGGATCTCAGAAGAAACCAATTTGAAGGTCACATTTCTCAGGTATATTCCATCTCTAATTACAATTGGTCTCATTTAGTTTATCTGGATTTGTCAGAGAATCAGTTGGATGGGGAGATTTCCCAAAATTTGAGTGAATGCAAGAATCTAAAGCACCTTAATCTTGCCCACAATAGATTTAGCAGACAGAAATTCCCCAAGATTGAAATGCTCTCAGCATTGGAATATCTCAACTTATCCAAAACTAGTCTGATTGGTTACATTCCTGGTGAAATCTCACAACTCAGTAATTTGAGTGCACTTGATGTTTCTATGAATCATCTTATAGGGAACATCCCTTTACTAAACAATAAAAACCTCCAAGTTCTTGACCTTTCAAACAACAATCTGAGTGGAGATGTCCCATCGTCAGTCATTGAGAAACTTCCTTTAATGGAGAAATACAACTTCTCTTATAATAACCTATCCTTCTGTGCTTCGGAGATCAAACCAGCTGTCATCCAAAGAGCATTCTATGGATCAGTGAACAGTTGCCCTATTGCTGCAAACCCAAGTCTTCTAAAAACAAGAGCCACTTTAAATAAGGGAATGAAGCTAGCTCTGGCATTGACCTTCTCAATGATCTGCTTGATTGCGGGGATTTTGTTTCTAGCTTTTGGTTGCCTTAAGAAAACAAAACCATGGCCTGTTAAGCAAACTTCATACAAAGAAGAACATAACATGTCAGGTCCCTTTTCATTCCACACTGATTCAACAACTTGGGTGGCTGATGTTAAGCAAGCAACATCCGTCCCAGTAATAATCTTTGACAAGCCACTGTTAAATATCACATTTGCAGACCTCTTGGCTGCAACTTCAAATTTTGATAGGGGTACCCTTTTGGCTGAAGGAAAATTTGGGCCTGTTTATAGAGGTTTTCTACCAGGTGGTATTCATGTAGCAGTTAAAGTTCTGGTGGTTGGATCCACTCTTACAGATAAAGAAGCTGCAAGAGAGCTTGAGTATCTTGGAAGAATAAAGCACCCCAATCTTGTTCCTCTAACTGGATATTGTGTAGCTGGGGATCAGAGGATCGCTATATATGACTACATGGAGAACGGCAACTTGCAAAATTTACTTTACGACTTGCCACTTGGTGTTCTTCAAAGTACAGAGGATTGGAGCACAGATACCTGGGAAGAAAATGACAGTAATGGGATTCAAAATGCTGGATCAGAAGGAGGGCTTACAACTTGGAGATTTCGCCATAAAATCGCACTAGGCACCGCTCGAGCATTAGCATTTCTACATCACGGATGCTCCCCACCAATCATCCACAGAGATGTTAAAGCTAGCAGTGTATACTTGGATTATAACTTGGAGCCAAGACTATCGGACTTTGGACTGGCTAAGATTTTTGGGGGTGGCTTGGATGAAGAGATTGCACTTTGTTCACCTGGTTATGTTCCACCAGAGTTTTCTCAACCAGAATTTGACACCTCAACTCCAAAATCCGATGTTTACTGTTTTGGGGTTGTTCTCTTTGAGCTACTAACGGGGAAGAAGCCAGTTGGAGATGATTATCCCGATGATAAAGAAACAACTTTGGTTAGTTGGGTGAGAGGACTAGTGAGAAAGAACAAAGCTTCCAGAGCCATTGATTCAAAAATTCATTATACCGGACCAGAAGAGCAAATGGAGGAGGCCCTTAAGATTGGTTATCTGTGCACTGCTGACCTTCCTTCCAAGCGACCAAGCATGCAGCAGATAGTTGGACTTCTTAAAGATATTGAACCTTCTCCTAATTAG 2565 0.4168 MGLGVFGSVLVLTLFFKHLASQQPNTDDFFVSEFLKKIGLASSQVYNFSVSVCSWQGVSCDAKREHVVGLVFSGMGLSGPIPDTTIGKLAKLRSLDLSHNKITDLPPDFWSFSMLKSLNLSSNHISGSLTNNIGNFGLLEVLDLSSNNFSGEIPEAISSLVSLKVIKLDHNRFEQRIPSGILKCRSLVSIDLSSNQLSGTVPDGFGTAFPYLSTLNLAGNSINGSDSDISGLKSIVSLNISGNSFQGSVMRLFQGRLEVMDLRRNQFEGHISQVYSISNYNWSHLVYLDLSENQLDGEISQNLSECKNLKHLNLAHNRFSRQKFPKIEMLSALEYLNLSKTSLIGYIPGEISQLSNLSALDVSMNHLIGNIPLLNNKNLQVLDLSNNNLSGDVPSSVIEKLPLMEKYNFSYNNLSFCASEIKPAVIQRAFYGSVNSCPIAANPSLLKTRATLNKGMKLALALTFSMICLIAGILFLAFGCLKKTKPWPVKQTSYKEEHNMSGPFSFHTDSTTWVADVKQATSVPVIIFDKPLLNITFADLLAATSNFDRGTLLAEGKFGPVYRGFLPGGIHVAVKVLVVGSTLTDKEAARELEYLGRIKHPNLVPLTGYCVAGDQRIAIYDYMENGNLQNLLYDLPLGVLQSTEDWSTDTWEENDSNGIQNAGSEGGLTTWRFRHKIALGTARALAFLHHGCSPPIIHRDVKASSVYLDYNLEPRLSDFGLAKIFGGGLDEEIALCSPGYVPPEFSQPEFDTSTPKSDVYCFGVVLFELLTGKKPVGDDYPDDKETTLVSWVRGLVRKNKASRAIDSKIHYTGPEEQMEEALKIGYLCTADLPSKRPSMQQIVGLLKDIEPSPN 854
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst9g02618 854 Gene3D Ribonuclease Inhibitor 30 181 IPR032675 -
Spst9g02618 854 PRINTS Leucine-rich repeat signature 354 367 - -
Spst9g02618 854 PRINTS Leucine-rich repeat signature 92 105 - -
Spst9g02618 854 SMART LRR_typ_2 282 306 IPR003591 -
Spst9g02618 854 SMART LRR_typ_2 112 136 IPR003591 -
Spst9g02618 854 SMART LRR_typ_2 89 111 IPR003591 -
Spst9g02618 854 SMART LRR_typ_2 160 184 IPR003591 -
Spst9g02618 854 SMART LRR_typ_2 377 400 IPR003591 -
Spst9g02618 854 Pfam Leucine rich repeat 185 244 IPR001611 GO:0005515
Spst9g02618 854 Pfam Leucine rich repeat 81 125 IPR001611 GO:0005515
Spst9g02618 854 Gene3D Transferase(Phosphotransferase) domain 1 623 853 - -
Spst9g02618 854 Gene3D Ribonuclease Inhibitor 182 252 IPR032675 -
Spst9g02618 854 FunFam Putative LRR receptor-like serine/threonine-protein kinase 508 622 - -
Spst9g02618 854 ProSiteProfiles Leucine-rich repeat profile. 378 400 IPR001611 GO:0005515
Spst9g02618 854 FunFam Calmodulin-binding receptor kinase CaMRLK 255 373 - -
Spst9g02618 854 SUPERFAMILY L domain-like 43 415 - -
Spst9g02618 854 Pfam Protein tyrosine and serine/threonine kinase 551 845 IPR001245 GO:0004672|GO:0006468
Spst9g02618 854 Gene3D Ribonuclease Inhibitor 253 326 IPR032675 -
Spst9g02618 854 SUPERFAMILY Protein kinase-like (PK-like) 532 847 IPR011009 -
Spst9g02618 854 Gene3D Phosphorylase Kinase; domain 1 507 622 - -
Spst9g02618 854 Gene3D Ribonuclease Inhibitor 327 428 IPR032675 -
Spst9g02618 854 SMART LRR_sd22_2 376 403 - -
Spst9g02618 854 SMART LRR_sd22_2 306 332 - -
Spst9g02618 854 SMART LRR_sd22_2 282 305 - -
Spst9g02618 854 SMART LRR_sd22_2 89 107 - -
Spst9g02618 854 FunFam Nuclear pore complex protein NUP107 30 179 - -
Spst9g02618 854 ProSiteProfiles Leucine-rich repeat profile. 91 112 IPR001611 GO:0005515
Spst9g02618 854 ProSiteProfiles Protein kinase domain profile. 547 854 IPR000719 GO:0004672|GO:0005524|GO:0006468
Spst9g02618 854 Pfam Leucine Rich repeat 283 298 IPR001611 GO:0005515
Spst9g02618 854 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 281 849 - -
Spst9g02618 854 Pfam Leucine Rich Repeat 139 160 IPR001611 GO:0005515
Spst9g02618 854 Pfam Leucine Rich Repeat 378 396 IPR001611 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst9g02618 Spst-Chr9 60184800 60187364 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst9g02618 77 849 Receptor kinase-like Gene Family AT5G07280 31.710 2.07e-110 364
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VII-2 Spst9g02618 PK_Tyr_Ser-Thr 1.4e-32 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst9g02618 - - gmx:100807051 1540.01