Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst9g02616 ATGGAAGAGGAAGAAGCGACGCAGCAACGAGTCACGGCATCGTCCCTTTCCACCGAGTCACTCGCTTCCACTGCTTACGAGGGAGCCCAACTCATCTCGCAAACCCTACTACTCCAATCTTCTTCGCCTCCCCGCGACAACGCTACTCGTGCGTTGCATATGCAAGGAAGCTCCACCGCATGTAAGATTGGCCGAGATGAGAGTAAGGTGTCAGCTCAGCATCCTGATGAGGAAACTATTGTAGAAGATGCAGTTGAGGCACATAAAAAACAGACAGAAAATCAACTTCAGATGTCTGTTTGTTCAACATCATTATTTAAACCATCACCAACCTCTGTGTCTCAGAATTCACCATCTGCCCCTAGTCCAACTATACCAGAACAACGATCATCTCCTCCTAAGGCTAATAGTGTACCAGTGCCAAAAGTGGAAAAAGGAACTCCTTCTGATGGTACAATCTTATCTTCTGTTTCTGTTGCAAGGGCATCTCCATCTGATGGATACAACTGGAGGAAGTACGGCCAGAAGCAAGTGAAGAGTCCTACAGGTTCTCGAAGTTATTACAGGTGTACCCATTCAAATTGTTGTGCTAAGAAGATTAAATTTTGTGACCACTCAGGATATGTGATAGAGATTGTTTACAAAAGTCAACATAGTCATGATCCCCCACACAAAATTGATTCTCCCAAAGAAAGTAATCTCGCACCTGCCAGTGAACCTAAAATAGAGTGCAGTGTTCCAAAGCAGTGTAGCAGAGTTCTGAATGATTCTGATCCATCATCTTCTCCAAAGGAATGTTTATATGAATCACCTTGCAGTGCTAATAAGAATCTAGAAAACTCATCGAATGGTGAGAATGGTGTAGTTTTGTTGAATGAAGAGCATGTTATTGACCCCAAGCCAAAAAGAAGGCAAGTTGCATATGAATTAATTTTTTTCATAGGAAAATTGAACAAAGGTGATTTAACTTGCTTGGATTCAGCAGTAAAATCTGGAAAGAAACCAAAGTATGTTGTACATGCAGAAGAAGATATGGGGATATCAGGTGATGGATACCGATGGCGCAAATATGGACAAAAATTGGTGAAGGGAAATCCACATTTCAGGGGTAAATGGTCACCTAGTGATGTTGCTAGGTGGAAGGTGAACAATGAGAAGAGAGGGAGGATCAACGTGATTGCATTAGATGTGATCCAGCCTAATGGTCTGGCTAGTTATCGGATACCTAAACTTGCCAGGGATTTCAAGGAGGTTGACCTAGGGAAAGGGAGGATGTTGAAGGTGGGGGTGAACCTAGTGTCTATGACCCTTGGTCGATGCCCTTCTGCTGGATGTCCTGTCCGAAAGCACATTGAGACTGATGTGGATAACGCAAAAGCTCTCATTATAACATACAAAGGAGTACATGATCATGACAAGCCTGTGCCCAAGAAACGACATGGTCCGCCAAGTGCTTCTCTTGTCGCTGCTTCAGCTCCTGCTTCAATAAACAATTTGCAGTCCAAAAAAGGTGTCTTGATACAAGACCAGGAAACTTCTGGTCAATGCCCAGAGGACACAGAAGAAGAAGAATTAACCGGAGAAGCGTTGGAACTTGGGGGTGAGAAAGCAATCGAGTCAGCTCGAACTCTTCTAAGTATAGGTTTTGAAATTAAACCTTGTTGA 1665 0.4348 MEEEEATQQRVTASSLSTESLASTAYEGAQLISQTLLLQSSSPPRDNATRALHMQGSSTACKIGRDESKVSAQHPDEETIVEDAVEAHKKQTENQLQMSVCSTSLFKPSPTSVSQNSPSAPSPTIPEQRSSPPKANSVPVPKVEKGTPSDGTILSSVSVARASPSDGYNWRKYGQKQVKSPTGSRSYYRCTHSNCCAKKIKFCDHSGYVIEIVYKSQHSHDPPHKIDSPKESNLAPASEPKIECSVPKQCSRVLNDSDPSSSPKECLYESPCSANKNLENSSNGENGVVLLNEEHVIDPKPKRRQVAYELIFFIGKLNKGDLTCLDSAVKSGKKPKYVVHAEEDMGISGDGYRWRKYGQKLVKGNPHFRGKWSPSDVARWKVNNEKRGRINVIALDVIQPNGLASYRIPKLARDFKEVDLGKGRMLKVGVNLVSMTLGRCPSAGCPVRKHIETDVDNAKALIITYKGVHDHDKPVPKKRHGPPSASLVAASAPASINNLQSKKGVLIQDQETSGQCPEDTEEEELTGEALELGGEKAIESARTLLSIGFEIKPC 554
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst9g02616 554 MobiDBLite consensus disorder prediction 39 76 - -
Spst9g02616 554 SMART WRKY_cls 164 222 IPR003657 GO:0003700|GO:0006355|GO:0043565
Spst9g02616 554 SMART WRKY_cls 348 473 IPR003657 GO:0003700|GO:0006355|GO:0043565
Spst9g02616 554 Gene3D WRKY domain 150 224 IPR036576 GO:0003700|GO:0006355|GO:0043565
Spst9g02616 554 MobiDBLite consensus disorder prediction 39 64 - -
Spst9g02616 554 SUPERFAMILY WRKY DNA-binding domain 439 474 IPR036576 GO:0003700|GO:0006355|GO:0043565
Spst9g02616 554 MobiDBLite consensus disorder prediction 165 184 - -
Spst9g02616 554 SUPERFAMILY WRKY DNA-binding domain 344 370 IPR036576 GO:0003700|GO:0006355|GO:0043565
Spst9g02616 554 MobiDBLite consensus disorder prediction 104 158 - -
Spst9g02616 554 MobiDBLite consensus disorder prediction 218 238 - -
Spst9g02616 554 ProSiteProfiles WRKY domain profile. 343 474 IPR003657 GO:0003700|GO:0006355|GO:0043565
Spst9g02616 554 Gene3D WRKY domain 333 475 IPR036576 GO:0003700|GO:0006355|GO:0043565
Spst9g02616 554 ProSiteProfiles WRKY domain profile. 159 223 IPR003657 GO:0003700|GO:0006355|GO:0043565
Spst9g02616 554 Pfam WRKY DNA -binding domain 350 369 IPR003657 GO:0003700|GO:0006355|GO:0043565
Spst9g02616 554 Pfam WRKY DNA -binding domain 439 471 IPR003657 GO:0003700|GO:0006355|GO:0043565
Spst9g02616 554 Pfam WRKY DNA -binding domain 166 220 IPR003657 GO:0003700|GO:0006355|GO:0043565
Spst9g02616 554 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 439 499 IPR044810 GO:0003700
Spst9g02616 554 MobiDBLite consensus disorder prediction 104 135 - -
Spst9g02616 554 SUPERFAMILY WRKY DNA-binding domain 162 223 IPR036576 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst9g02616 Spst-Chr9 60159393 60164745 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst9g02616 439 554 WRKY Transcription Factor Family AT4G30935 65.517 3.36e-39 147
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Spst9g02616 WRKY 7.8e-17 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst9g02616 - - gmx:100800480 495.738