Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst9g02577 ATGCCAGATTTAGGGAATCTGTCTTTGTCTTCGACTCTCACACTCACTCACTGCACCTCTGATGTCGCAGATGCTCCCGTCAAAACCCTTCCTAATGGCTTCTGTTCAGAGCCTGCCTTCGAGCCTCGGGTTTTGAAGCGCACCCGTGGCTCCCTGGATAGGGTCAAGAAGCCCGCCTCTGACAAAGCCTTCCAGGATCGCCTCAAAGATCCCTTCTCTCATCCTTTTCTTGTTGGTGCTCCCAAGATGGGTGAATGTTGTTTTTGCCGCCATTTTATCTACCCTGGGGAGGAGCTATTGTGTACTGTTCGCGGATGCGACGCACGCTATCATCCCGAATGTGCAAAAGAATCTGTTGGGGCTACCAGTCTGAAAAAATTCAAGTGTCCACAGCATGTGTGCTTCATTTGCAAGCAAAAAAAGCAATTGAGGTGTGTACGTTGTAAAATGGCATTCCATAGTAAATGTGCACCATGGCCAGATGCAGTGTTGCAGCTAAAAGATTATCCTGGGCAAGCTGTTTGCTGGAGGCATCCTTCTGATTGGCGTCTGGATAGGAAGCCTGATGCTTCAACAAGTGACATTTCGGAAGTATTCTGTCGCTTACCTCTTCCATTTATCAGCGAGGAGTTTAAGATTGATTCCACGTGGAAAGACATGGACAGTAAGATGGAGCAGCCACCACCATATGTACACATAAGACGCAATATATACTTAGTAAAGAAGAAACGTAGTAATGTGGATGATGGTGCAGGGTGTACCAGTTGCAGTTCTTCATGTTCTGATAATTGTGTGTGCAGGGTTCAATGCATAAGCTGTTCTAAAGCATGTCGCTGCTCAGAAAATTGCAATAATCGTCCATTTCGCAAGGAGAAAAAGATCAAGATAGTCAAGACTGAACTTTGTGGATGGGGAGTGGAGGCCGCTGAAACAATTGATAAAGGTGGATTTATAGTGGAGTATATTGGAGAAGTAATTGACGATGCTTTATGTGAGAAGAGGCTCTGGGACATGAAATACAGGGGTGTACAGAATTTTTACATGTGTGAGATTCGGAAAGACTTCACAATCGATGCAACTTTCAAAGGAAATATTTCACGCTTCTTGAACCATAGCTGTGATCCCAACTGTGTTTTGGAAAAGTGGTTAGTAGTGTCAAATACCATCGTACTCATCCATGCATTCCCTCTTCAGAGATTCATAAACAGATATGTGGTTTCCTAG 1224 0.4461 MPDLGNLSLSSTLTLTHCTSDVADAPVKTLPNGFCSEPAFEPRVLKRTRGSLDRVKKPASDKAFQDRLKDPFSHPFLVGAPKMGECCFCRHFIYPGEELLCTVRGCDARYHPECAKESVGATSLKKFKCPQHVCFICKQKKQLRCVRCKMAFHSKCAPWPDAVLQLKDYPGQAVCWRHPSDWRLDRKPDASTSDISEVFCRLPLPFISEEFKIDSTWKDMDSKMEQPPPYVHIRRNIYLVKKKRSNVDDGAGCTSCSSSCSDNCVCRVQCISCSKACRCSENCNNRPFRKEKKIKIVKTELCGWGVEAAETIDKGGFIVEYIGEVIDDALCEKRLWDMKYRGVQNFYMCEIRKDFTIDATFKGNISRFLNHSCDPNCVLEKWLVVSNTIVLIHAFPLQRFINRYVVS 407
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst9g02577 407 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 80 181 IPR013083 -
Spst9g02577 407 PANTHER SET DOMAIN PROTEINS 30 389 - -
Spst9g02577 407 SUPERFAMILY FYVE/PHD zinc finger 76 133 IPR011011 -
Spst9g02577 407 Gene3D SET domain 203 401 IPR046341 -
Spst9g02577 407 SUPERFAMILY SET domain 211 387 IPR046341 -
Spst9g02577 407 ProSiteProfiles SET domain profile. 292 407 IPR001214 GO:0005515
Spst9g02577 407 SMART set_7 292 407 IPR001214 GO:0005515
Spst9g02577 407 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 1 394 IPR025787 -
Spst9g02577 407 Pfam SET domain 303 379 IPR001214 GO:0005515
Spst9g02577 407 SMART PHD_3 85 133 IPR001965 -
Spst9g02577 407 SMART PHD_3 134 179 IPR001965 -
Spst9g02577 407 ProSiteProfiles AWS domain profile. 249 292 IPR006560 GO:0005634|GO:0042054
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst9g02577 Spst-Chr9 59731602 59735082 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst9g02577 273 393 C2H2 Transcription Factor Family AT2G23740 38.806 4.25e-19 88.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Spst9g02577 SET 5.2e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst9g02577 - - pvu:PHAVU_009G195400g 740.725