LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Spst9g02521	ATGGCCTCCACCGCCCGGGACGAATCCTCCGACAACGACAGCACCTGCTCCTCGGGAACCGTGCTCGACTCCTCCCGCAGCTGGCTCAGCACCTTTAGCTTTCGCCGCGCCAGCCGCGGCACCAGCCGCAGCTCCCTCTCCCTCTCCGAGACTACCACCGGGGCTGCATGTGAGGCGATGCGCCGGCTCCACCTCCACAACACTGTTGGCCTCGATCACTTCCGCCTTCTGCGGCGGCTCGGAAGCGGCGACATCGGGAACGTGTACCTCTGCCAGATACGGAATCCGGTGGTGGGGTTGCCGCAGTGCCTCTACGCCATGAAGGTGGTGGACAGAGAGGCGCTGGCCATACGAAAGAAGCTGGAGCGGGCGGAGATGGAGAAGGAGATTCTAGCCATGATGGATCACCCCTTCTTGCCTACCCTATACGCTGCGTTTGATGCCTCTCATTACTCTTGCTTCGTCATGGACTTTTGCCCCGGCGGAGACTTATTCTCCGCTCGCCAACGCAACCCTGGGAAACGCTTTACCATCTCATCCGCTAAGTTTTATGCAGCCGAGACCCTCGTGGCATTAGAGTATCTCCACATGAAGGGTGTAGTGTACAGGGATTTGAAGCCGGAAAATGTGCTGGTGAGGGAGGACGGGCACATTATGCTTTCGGATTTTGATCTGTGTCTCAAATGCGACGTCGTTCCAAAGCTGTTGAGAAGCAAAACCAGATCGGAAGGCAGCGTCAAGACTCGAACATCTTCTTGTGCTGCCCCTGTGCAATCCTGTTTCTCCTCCTCAAGCAAGAGAAAGAAGGTAACAACAGTTATAAGGGAGAATGTGGAAGTGTGTGAACTTGACACAGAGGTAGTGGCAGAGCCCATCAATGCAAGGTCCAAGTCATTTGTGGGAACCCATGAGTACTTGGCACCTGAAGTGATTTCTGGTCAAGGACATGGCAGTGCAGTGGATTGGTGGACTTTTGGAGTTTTCTTGTATGAAATGTTATATGGGAGAACACCCTTCAAAGGTGAGAACAATGAGAAAACACTCACAAACATTCTGAAGCAGCCCTTGGCTTTCCCTAGAATTGCAGTGAGTAGCAGCAAGGAGTTTGAAGAGATGGTGAGGGTTCAAGACCTCATCAGTAAGCTCTTGTTGAAGAACCCAAAGAAGAGAATTGGGTGCTGCATGGGCTCAGTTGAGATCAAGAGGCATGAGTTCTTCAAGGGAGTGAATTGGGCTCTAATTAGATCAGTTAGGCCACCGGAGGTCCCTACTGATATGAAAAAGATTAGGAGTAGAGTTTTGTTACAGAAACTCAGCACGAAAGAGAAGGATCAACCCTTTCAGATTACTCATCATTTTGACTACTTCTGA	1371	0.5193	MASTARDESSDNDSTCSSGTVLDSSRSWLSTFSFRRASRGTSRSSLSLSETTTGAACEAMRRLHLHNTVGLDHFRLLRRLGSGDIGNVYLCQIRNPVVGLPQCLYAMKVVDREALAIRKKLERAEMEKEILAMMDHPFLPTLYAAFDASHYSCFVMDFCPGGDLFSARQRNPGKRFTISSAKFYAAETLVALEYLHMKGVVYRDLKPENVLVREDGHIMLSDFDLCLKCDVVPKLLRSKTRSEGSVKTRTSSCAAPVQSCFSSSSKRKKVTTVIRENVEVCELDTEVVAEPINARSKSFVGTHEYLAPEVISGQGHGSAVDWWTFGVFLYEMLYGRTPFKGENNEKTLTNILKQPLAFPRIAVSSSKEFEEMVRVQDLISKLLLKNPKKRIGCCMGSVEIKRHEFFKGVNWALIRSVRPPEVPTDMKKIRSRVLLQKLSTKEKDQPFQITHHFDYF	456

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Annotation information

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Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Spst9g02521	456	Gene3D	Transferase(Phosphotransferase) domain 1	293	424	-	-
Spst9g02521	456	ProSiteProfiles	Protein kinase domain profile.	74	406	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
Spst9g02521	456	Gene3D	Transferase(Phosphotransferase) domain 1	159	228	-	-
Spst9g02521	456	FunFam	serine/threonine-protein kinase D6PK-like	294	424	-	-
Spst9g02521	456	Pfam	Protein kinase domain	296	406	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
Spst9g02521	456	Pfam	Protein kinase domain	75	229	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
Spst9g02521	456	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	200	212	IPR008271	GO:0004672\|GO:0006468
Spst9g02521	456	FunFam	protein kinase PINOID	159	227	-	-
Spst9g02521	456	PANTHER	FLIPPASE KINASE 1-RELATED	30	427	-	-
Spst9g02521	456	FunFam	protein kinase PINOID 2	72	158	-	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Spst9g02521	Spst-Chr9	59044871	59046333	Dispersed/Wgd

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Spst9g02521	11	456	AGC Kinase Gene Family	AT2G26700	55.278	0.0	536

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Transcription factors information

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Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	AGC_RSK-2	Spst9g02521		Pkinase	8.8e-32	CL0016

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Spst9g02521	K08286		-	gmx:100787216	728.398

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Event-related genes

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Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Spst9g02521	9	59044871	59046333	Spst9g02521	9	59044871	59046333	ECH
	Spst3g04887	3	100674202	100676072	Spst9g02521	9	59044871	59046333	PCT

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