Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst9g02510 ATGCAGAACGAGGAAGGACAGATCACTGAGCTTTACATCCCTAGGAAGTGCTCTGCTACGAACAGATTGATTACTGCAAAAGACCATGCTTCGGTTCAGATTAACATTGGGCACGTGGATGAGAATGGTATTTACAATGGGCAATTCTCCACCTTTGCCCTTTGTGGCTTCATCCGTGCTCAGTGTGAACTGTGGCCTTTGTTATGTGTTTGA 213 0.4554 MQNEEGQITELYIPRKCSATNRLITAKDHASVQINIGHVDENGIYNGQFSTFALCGFIRAQCELWPLLCV 70
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst9g02510 70 ProSitePatterns Ribosomal protein S21e signature. 11 19 IPR018279 GO:0003735|GO:0005840|GO:0006412
Spst9g02510 70 PIRSF RPS21e 1 67 IPR001931 GO:0003735|GO:0005840|GO:0006412
Spst9g02510 70 FunFam 40S ribosomal protein S21 1 64 - -
Spst9g02510 70 Pfam Ribosomal protein S21e 1 63 IPR001931 GO:0003735|GO:0005840|GO:0006412
Spst9g02510 70 Gene3D - 1 64 IPR038579 -
Spst9g02510 70 PANTHER 40S RIBOSOMAL PROTEIN S21 1 63 IPR001931 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst9g02510 Spst-Chr9 58917439 58917828 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst9g02510 1 63 Cytoplasmic Ribosomal Protein Gene Family AT5G27700 82.540 3.91e-38 119
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst9g02510 K02971 - gmx:100817753 125.561