Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst9g02477 ATGGGGAGAGGAAGGGTGCAGTTGAAGAGGATCGAGAACAAGATCAATAGGCAAGTAACGTTCTCCAAGAGAAGGTCTGGTTTGCTCAAGAAAGCTCATGAGATCTCTGTGCTTTGTGATGCTGAAGTGGCCCTCATAGTCTTCTCCACCAAAGGAAAACTCTTTGAGTACTCCAGCGATCCATGGAATTCAGATTTACTTATGGAAAGAATTCTTGAACGGTATGAGAGGTATTCATACGCAGAGAGGCAGCTTGTTGCAAGTGATCAACCACAAACTGAAAATTGGACTCTAGAACATGCAAAGCTCAAAGCAAGGTTGGACGTTCTACAGAAAAATCAAAGGAATTTCATGGGACAAGATTTGGATGGTCTAAGTATCAAAGAGCTTCAGAATTTGGAGCATCAGCTTGATAGTGCTCTCAAACACATTAGATCACGAAAGAACCAACTCATGTATGAATCTATTTCAGAGCTTAATAAAAAGGAACATGATTTGGATAAGTTGGAAAAGTTGTGCACTCATGAAGCATGA 534 0.4082 MGRGRVQLKRIENKINRQVTFSKRRSGLLKKAHEISVLCDAEVALIVFSTKGKLFEYSSDPWNSDLLMERILERYERYSYAERQLVASDQPQTENWTLEHAKLKARLDVLQKNQRNFMGQDLDGLSIKELQNLEHQLDSALKHIRSRKNQLMYESISELNKKEHDLDKLEKLCTHEA 177
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst9g02477 177 Coils Coil 93 113 - -
Spst9g02477 177 ProSiteProfiles K-box domain profile. 93 177 IPR002487 GO:0003700|GO:0005634|GO:0006355
Spst9g02477 177 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Spst9g02477 177 Gene3D - 13 91 IPR036879 GO:0003677|GO:0046983
Spst9g02477 177 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 160 - -
Spst9g02477 177 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Spst9g02477 177 SUPERFAMILY SRF-like 2 98 IPR036879 GO:0003677|GO:0046983
Spst9g02477 177 FunFam MADS-box transcription factor MADS-MC 13 91 - -
Spst9g02477 177 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Spst9g02477 177 Pfam K-box region 88 170 IPR002487 GO:0003700|GO:0005634|GO:0006355
Spst9g02477 177 CDD MADS_MEF2_like 2 84 IPR033896 GO:0000977|GO:0045944
Spst9g02477 177 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Spst9g02477 177 Coils Coil 130 150 - -
Spst9g02477 177 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Spst9g02477 177 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Spst9g02477 177 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst9g02477 Spst-Chr9 58519067 58525251 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst9g02477 1 174 MADS-box Gene Family AT1G26310 64.407 7.08e-77 228
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Spst9g02477 K-box 9.1e-27 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst9g02477 K09264 - gmx:100816836 289.271