Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst9g02474 ATGGTGTCGGCGGAACCAAGATTTTATCGATTGCTCCTACGTTGGCATTGTCACCGACACCCAGACCGTTACCCCTCTCCAGCTGGCATGGAAGGTGTCAGTGATAAACCGCAGAGAAACATAACATTTGCATGCTTGAAGTTGGTTGCTTTAATTGCCCTATGCTTCGTTCTAATCTCTCCAGCAGAATCATTTGATCCATTGGATCCAACTGGGAACGTGACCATAAGATGGGATATTATGTCTTGGACATCAGATGGATATTTGGCCACTGTGACATTGTTTAATTTCCAACTGTACCGCAATATTATGAATCCTGGGTGGACTCTAGGATGGACATGGGCAAAGAAGGAAATAATATGGGCCATGATGGGGGCTCAAGCCACAGAGCAAGGAGACTGTGCCAAGTTCAAGTTGAAGATTCCTCATAGCTGCAAGAGGAATCCTCAAGTGGTTGATTTGCTACCTGGAGCTCCTTTCAACATGCAGTTCACCAACTGTTGCAGGGGTGGTGTGCTTACATCATGGGGACAGAACCCTTCGGGTGCAGTCTCATCATTTCAGATAGGAGTTGGGCTCTCTGGCACCTCCAACAAGACAGTCAAATTGCCTAAGAACTTCAAATTGCTGGGACCAGGACCAGGATATTCATGTGGCCCTGCTAAGATTGTTCCATCCACTGCAATCCTCACAGATGATCATAGGCGAAAAATGCAGGCATTGATGTCCTGGAATGTGACATGCACTTATTCACAGTTTCTTGCCTCCAAGAATCCTAGCTGCTGCGTTTCTTTATCATCTTTCTACAGTGACAAAATCACAGGTTGCCCACCTTGTGCTTGTGGTTGCCAGAACAACGATACCTGTGTCACGAGAGATTCAAAGATCCTGCAAGAGAATGTCACCTCACCTCACCGAAAATCAGACATCACACCAAAACCATTGTTACAATGCACACACCACCTGTGTCATGTCCGGGTGCACTGGCATTTGAAAGACAACTATCAGGACTATTGGCGTGTCAAGATTGCCATTATCAACTTCAACTATGGATTGAATTTCACCGATTGGTCTCTTGTGGTGCAGCACCCGAATCTCAATAATGTAACCCAAGTCTATAGCTTTGAATACATGCCACTTCTTCCCTTTGAATCCATAAATGACACTGGCATGTTCTATGGTTTGAAATATTACAATGATCTGTTGATGGAAGCTGGGCCTAAAGGGAATGTCCAGTCCGAGGTGCTCATGAAGAAGGATAAGAACACATTTACTCTCAAGCAGGGATGGGCATTTCCAAGGAGGGTCTACTTTAATGGTGATGAATGCATGCTGCCACCTCCTGATTCATATCCTATGTTGCCAAACTCTGCCCCCAATAAACGACCAACAAATATTGTATTGACGGCAACCTATGTGTTTTTTACATTATTTCTGCATTTGGTTGTAACATTTTTTTGA 1461 0.4456 MVSAEPRFYRLLLRWHCHRHPDRYPSPAGMEGVSDKPQRNITFACLKLVALIALCFVLISPAESFDPLDPTGNVTIRWDIMSWTSDGYLATVTLFNFQLYRNIMNPGWTLGWTWAKKEIIWAMMGAQATEQGDCAKFKLKIPHSCKRNPQVVDLLPGAPFNMQFTNCCRGGVLTSWGQNPSGAVSSFQIGVGLSGTSNKTVKLPKNFKLLGPGPGYSCGPAKIVPSTAILTDDHRRKMQALMSWNVTCTYSQFLASKNPSCCVSLSSFYSDKITGCPPCACGCQNNDTCVTRDSKILQENVTSPHRKSDITPKPLLQCTHHLCHVRVHWHLKDNYQDYWRVKIAIINFNYGLNFTDWSLVVQHPNLNNVTQVYSFEYMPLLPFESINDTGMFYGLKYYNDLLMEAGPKGNVQSEVLMKKDKNTFTLKQGWAFPRRVYFNGDECMLPPPDSYPMLPNSAPNKRPTNIVLTATYVFFTLFLHLVVTFF 486
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst9g02474 486 PANTHER PROTEIN COBRA 52 469 IPR006918 GO:0010215|GO:0016020
Spst9g02474 486 Pfam COBRA-like protein 88 251 IPR006918 GO:0010215|GO:0016020
Spst9g02474 486 PIRSF COBRA 38 484 IPR006918 GO:0010215|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst9g02474 Spst-Chr9 58372386 58376985 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst9g02474 43 480 COBRA Gene Family AT3G02210 57.370 0.0 566
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst9g02474 - - gmx:100780434 875.93
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst9g02474 9 58372386 58376985 Spst9g02474 9 58372386 58376985 ECH
Spst3g04778 3 99508751 99511513 Spst9g02474 9 58372386 58376985 PCT