Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst9g02456 ATGAAGGCGCACCCAAACACAAAAAACGGGTACTGGTTAAAGAAGTTGTCAATGGAAACCAGAACATATTCGATATTGATTTTGCCACTGTCGGCATCCACGTCCATTGTCATATCAGTGAGGCATGGAAACAGAGTGAAGATGTTAAAGGCGGTGAATGAGAAAAAGGGTTTTGCTAATGCGTTGGGAGAACGCGTTCGGATTGCGGAGAGTGGTGGGTCTATGGGGTTTCAGGGAGAGTGGATAAGGAGAGAGATGGAATCCATGGGAGGGAGATTTTGCAGAGACACACGATCGACAGTGGGGGACGCGCTTGGAGGGCGCGTGGGGGAGGTTGACGTCAACGCGCTTTTGGGTTGCCCTAACGCAAGGGAGGGCATGACGGAAGAACTTGCTGTTTCTCTCTCTCTTGTTCTTATCCATCGCATTGAAAAGCAGCACCATCACCACACCACACCACACCTTGTTTTCATAAATACGGGTCTCACAGCCTCAGCCATGATGGAGCCTATGGACATCGTTGGGAAAGCCAAGGAAGACGCTTCGCTTCCTAAAGCAACAATGACGAAAATTATCAAGGAGATGTTGCCCCCGGACGTGCGTGTCGCCAGAGATGCGCAGGATTTGTTGATCGAATGTTGTGTCGAATTTATAAACCTTGTCTCATCTGAGTCCAATGAAGTCTGTAACAAAGAGGAAAGAAGGACAATTGCACCGGAGCACGTGTTGAAGGCTTTAGGGGTTCTCGGATTTGGAGACTACATTGAGGAAGTTTATGCAGCATATGAACAACACAAGCTGGAGACAATGCAAGATTCTTTGAAAGGTGCCAAGTGGAGCAGCAACAGGGCTGAAATGACTGAGGAAGAAGCATTGGCTGAGCAGCAAAGGATGTTTGCAGAGGCACGTGCCAGAATGAATGGAGGAGCCATTACTTCCAAGCAGCCAGACGCTGACCAAAGTTTAGAGAGCTAA 975 0.4851 MKAHPNTKNGYWLKKLSMETRTYSILILPLSASTSIVISVRHGNRVKMLKAVNEKKGFANALGERVRIAESGGSMGFQGEWIRREMESMGGRFCRDTRSTVGDALGGRVGEVDVNALLGCPNAREGMTEELAVSLSLVLIHRIEKQHHHHTTPHLVFINTGLTASAMMEPMDIVGKAKEDASLPKATMTKIIKEMLPPDVRVARDAQDLLIECCVEFINLVSSESNEVCNKEERRTIAPEHVLKALGVLGFGDYIEEVYAAYEQHKLETMQDSLKGAKWSSNRAEMTEEEALAEQQRMFAEARARMNGGAITSKQPDADQSLES 324
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst9g02456 324 MobiDBLite consensus disorder prediction 305 324 - -
Spst9g02456 324 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 181 246 IPR003958 -
Spst9g02456 324 SUPERFAMILY Histone-fold 179 311 IPR009072 GO:0046982
Spst9g02456 324 FunFam Negative cofactor 2 beta 173 311 - -
Spst9g02456 324 Coils Coil 283 303 - -
Spst9g02456 324 Gene3D Histone, subunit A 172 311 IPR009072 GO:0046982
Spst9g02456 324 PANTHER PROTEIN DR1 HOMOLOG 168 323 IPR044255 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst9g02456 Spst-Chr9 57964787 57972116 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst9g02456 168 320 CCAAT-DR1 Transcription Factor Family AT5G23090 81.290 1.70e-88 260
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Spst9g02456 CBFD_NFYB_HMF 3.2e-22 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst9g02456 K21751 - gmx:547635 297.745