Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst9g02452 ATGGCCGAAGCAGAAGACAACGAGCCCACCTCGTCCGAGCGCGAGGACCAAACCAAAGCTAACAAGAAGAAGAATCGCAAGAGAAAAAGACCAAACAAGACCACGCAAAAACAAGAGGAGAAGAACGATGATAAAATTGATAGCGCGCTGACACAAACCGAAGATGAAGAAGAAGAAGAAGATGAACGAAAAGATGAAGAGATAAAGGTGAGCAATAACGATTCGTCGGGAATCATGAGTTCCGAGTCTTTCTCCTCCCTTAGCTTGTCCGAACCTACTTCCAAAGCCATTGCGGACATGGGCTTCCACCGTATGACTCAGATTCAAGCGAGGGCGATTCCGCCGCTGCTGATCGGAAAGGACGTGCTGGGTGCTGCGAGAACGGGTGCTGGGAAAACCCTAGCGTTTTTGGTTCCGGCGGTGGAGTTGCTGTACAACGCTCAGTTCACTCCGCGGAACGGTACGGGTGTTGTTGTGATATGTCCGACGAGGGAACTCGCGATTCAGACGCATGCCGTGGCCAAGGAGCTGCTGAAGTACCATTCGCAAACGCTCGGCTTGGTGATTGGGGGTTCAGGGCGAAGGGGAGAGGCTGAGCGCATTGTGAAAGGGGTGAACCTATTGGTGGCGACGCCGGGTAGGCTTCTCGATCACCTTCAAAACACGAACGGGTTCATATATAAAAACTTGAAGTGCCTCATGATTGATGAAGCCGACAGGATATTGGAAGCAAACTTTGAGGAGGAGATGAAGCAGATTATTAACATACTTCCAAAGCAAAGGCAAACGGCTTTGTTTTCAGCCACACAAACAAAGAAGGTTAAGGATCTGGCCCGCTTATCTTTTCAAACAACTCCTATCTATATTGATGTAGATGATGGGAGAAAAAAGGTTACTAATGAAGGATTGCAACAGGGTTATGTTGTTGTTCCCTGTGCTAAGCGTTTTGTTGTTCTCTACTCATTATTGAGGAGATATCAAACAAAAAAAGTGATGGTTTTTTTCTCTTCATGCAACTCTGTCAAATTCCACGCAGAACTTCTCAAAAGTGCTGGTTTGGACTGCTTAAATATTCATGGAAAACAAAAGCAACATGCCCGTACTTCTACATTCTTCAACTTCTGCAAAGCTGAAAAAGGAATCTTGCTCTGTACTGATGTTGCTGCTCGAGGACTTGACATACCTGATGTGGACTGGATTGTGCAGTATGATCCACCTGATGAACCAAAGGAATATATCCATAGGGTTGGTAGAACAGCTCGTGGGGAAGGTGGAAAAGGAAATGCTTTACTTTTCCTAATACCTGAAGAATTGCAATTTCTTCACTATTTGAAGGCAGCAAAGGTTCCTGTGAAAGAGTATGCATTTGATAATAAGAAGCTGGCGAATGTACAATCTCATCTGGAGAAGTTGGTGGCTGGCATTTATCATTTGAACAATATGGCTAAAGATGCATATCGGTCATATATATTAGCATATAATGCACATTCTATGAAAGAAATATTCAATGTTCATCGGCTAGATTTACTGGCTGTTGCTGCTTCATTTTGTTTTTCCAACCCACCGAAGGTGAATCTGAACATAGATAGCAGTGCTTCGAAGCATAGGAAGAAAATAAGCAAAGTGGAAGGGAAGAGAAGATGA 1644 0.4446 MAEAEDNEPTSSEREDQTKANKKKNRKRKRPNKTTQKQEEKNDDKIDSALTQTEDEEEEEDERKDEEIKVSNNDSSGIMSSESFSSLSLSEPTSKAIADMGFHRMTQIQARAIPPLLIGKDVLGAARTGAGKTLAFLVPAVELLYNAQFTPRNGTGVVVICPTRELAIQTHAVAKELLKYHSQTLGLVIGGSGRRGEAERIVKGVNLLVATPGRLLDHLQNTNGFIYKNLKCLMIDEADRILEANFEEEMKQIINILPKQRQTALFSATQTKKVKDLARLSFQTTPIYIDVDDGRKKVTNEGLQQGYVVVPCAKRFVVLYSLLRRYQTKKVMVFFSSCNSVKFHAELLKSAGLDCLNIHGKQKQHARTSTFFNFCKAEKGILLCTDVAARGLDIPDVDWIVQYDPPDEPKEYIHRVGRTARGEGGKGNALLFLIPEELQFLHYLKAAKVPVKEYAFDNKKLANVQSHLEKLVAGIYHLNNMAKDAYRSYILAYNAHSMKEIFNVHRLDLLAVAASFCFSNPPKVNLNIDSSASKHRKKISKVEGKRR 547
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst9g02452 547 MobiDBLite consensus disorder prediction 33 49 - -
Spst9g02452 547 Pfam Domain of unknown function (DUF4217) 464 524 IPR025313 -
Spst9g02452 547 CDD SF2_C_DEAD 303 433 - -
Spst9g02452 547 PANTHER RNA HELICASE 27 464 - -
Spst9g02452 547 FunFam RNA helicase 299 529 - -
Spst9g02452 547 SMART helicmild6 342 423 IPR001650 -
Spst9g02452 547 Gene3D - 25 292 IPR027417 -
Spst9g02452 547 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 113 288 IPR014001 -
Spst9g02452 547 Pfam Helicase conserved C-terminal domain 318 422 IPR001650 -
Spst9g02452 547 MobiDBLite consensus disorder prediction 50 64 - -
Spst9g02452 547 SMART ultradead3 101 306 IPR014001 -
Spst9g02452 547 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 82 110 IPR014014 GO:0003724
Spst9g02452 547 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 234 242 IPR000629 -
Spst9g02452 547 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 154 444 IPR027417 -
Spst9g02452 547 MobiDBLite consensus disorder prediction 72 89 - -
Spst9g02452 547 SMART DUF4217_3 463 526 IPR025313 -
Spst9g02452 547 CDD DEADc_DDX18 93 290 IPR044773 GO:0003724|GO:0005524
Spst9g02452 547 Gene3D - 299 542 IPR027417 -
Spst9g02452 547 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 318 472 IPR001650 -
Spst9g02452 547 MobiDBLite consensus disorder prediction 1 89 - -
Spst9g02452 547 Pfam DEAD/DEAH box helicase 106 277 IPR011545 GO:0003676|GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst9g02452 Spst-Chr9 57936748 57943297 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst9g02452 82 441 Eukaryotic Initiation Factors Gene Family AT3G13920 31.319 5.38e-46 165
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst9g02452 K13179 - gmx:100798290 930.243