Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst9g02416 ATGGAAGAAGATCAAGAAGTGAAGCACGTGTGCAAGTTCTGCAGCAAGAGCTTCCCTTGTGGGAGATCCTTGGGAGGTCACATGAGGTCACATGTCACCAATGTTTCAACCGAGACAGAGAAGCTTTCATCTTTCAACAACAACAGCAACAACAATGGTGGAGAGAGAGACACCGGAATAATGGGTTCTGAAGGGGGAACTAGCAATGGAGGGTATGGTCTGAGAGAGAACCCGAAGAAGACTTGGAGGTTCACGGATTCTAGTGAGGACACTTTGTTGGTGTTGGACAAGTTGTGCAAGGAGTGCGGCAAAGGATTTCACTCTTGGAAAGCTCTGTTTGGTCACATGAAGTGCCACTCTGAGAGGGTGTCCCAAAACAACAGCAACTTATTGGAGGATCAAGATTCGTGGACTGATAATACCAATGCTAGCCAGAAGATGGTGTTGGATGATAGCCACTCTGACAATGAAGCCACTGCTCCAAACCGAAGGAGAAGATCTAAGAGGAGAAGGACAAGGTACGTGGCCCCATCAACTTCTTCTGTGTCCTTTGTTTCTGAGGCTGAGCAGGAGCAGGAAGAGGTTGCCATGAGTTTGATGATGCTTAGCAGGGATGTGACTCCTTGGTGTGGTCTCAATTCTGTTAACTCATTGCACTTTGAATCTCCTTCGGTTACAACCAATTTGGATTCTAAGGCAGAGGGCAAGAGCGTTGTCTCCAATGGTTCTGAAAAAAAGGTTACCAAACTAAAGGATGTGAAGGGGGAATTTGGCTATTTGGATGCTTCAAATCTCAACTCCAAAGGTAAAATAAGCTCAGTACTTTTGGGTACTGAGAGTCCTGGATTTGTGGTCAGCAAGACTTTGGTTTCCATCCATGGGAATGACAAGAAGACTGAGCTAGATTCTAATTCTGCATTTGAGGACAATGAAATAGATGATGATAGAAATAATAAGTACACTTCAATCAAGGCAAAGTATTTGGATTCTGAATTGAAGGCAAGTTCTTCGAAGAGTTGGGTGAAGAACAAGTCTCCAGAAGCTGAATTGAGCAAAAGCTCCAACAAGAGAGGAAAATTTGAGTGTACTACTTGCAAGAAAATCTTCCATTCATACCAAGCACTTGGAGGTCACAGAGCTAGTCACAAGAAAATCAAGGGATGCTTTGCTTCAAGAAATGAGAGCAGTGAAAACAGCACTGAGTTGGAAGCAGACCTCTCCCCTGACCCAACAACAGAAAGTAAGCTCGTGAAGAATGAATATGTGGAAGAACATGAAATGGTTACTGTTACTACTACTACTACCACTACTACTGGTTTTGACAATGCGGAAGACATAGTGAGAGAGTCCAAGAAGGGGAAAGGGCATGAGTGCCCAATTTGCCTCAAGGTTTTCCCATCTGGCCAAGCCTTGGGTGGCCACAAGAGATCTCATTTGCCTAGTGGGTCTGAGAATGCTAGAAACTGTCAAAGTCAAACAGTTGTACTTGAGGGAGCAAGCCCAGAGATTAGGGACTTTTTTGATCTTAATCTTCCTGCTTCTACAGAGGAAGAAGGTAATAGCCATGGCCATGCTGAGCCTTACAGACCTTGGTGGGTAGTAGGAGGCAGCGTCAAGCAGGAGGCACTGGTAGGCCTCATTTCTAACTAA 1650 0.4485 MEEDQEVKHVCKFCSKSFPCGRSLGGHMRSHVTNVSTETEKLSSFNNNSNNNGGERDTGIMGSEGGTSNGGYGLRENPKKTWRFTDSSEDTLLVLDKLCKECGKGFHSWKALFGHMKCHSERVSQNNSNLLEDQDSWTDNTNASQKMVLDDSHSDNEATAPNRRRRSKRRRTRYVAPSTSSVSFVSEAEQEQEEVAMSLMMLSRDVTPWCGLNSVNSLHFESPSVTTNLDSKAEGKSVVSNGSEKKVTKLKDVKGEFGYLDASNLNSKGKISSVLLGTESPGFVVSKTLVSIHGNDKKTELDSNSAFEDNEIDDDRNNKYTSIKAKYLDSELKASSSKSWVKNKSPEAELSKSSNKRGKFECTTCKKIFHSYQALGGHRASHKKIKGCFASRNESSENSTELEADLSPDPTTESKLVKNEYVEEHEMVTVTTTTTTTTGFDNAEDIVRESKKGKGHECPICLKVFPSGQALGGHKRSHLPSGSENARNCQSQTVVLEGASPEIRDFFDLNLPASTEEEGNSHGHAEPYRPWWVVGGSVKQEALVGLISN 549
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst9g02416 549 MobiDBLite consensus disorder prediction 391 412 - -
Spst9g02416 549 MobiDBLite consensus disorder prediction 391 407 - -
Spst9g02416 549 SMART c2h2final6 9 31 IPR013087 -
Spst9g02416 549 SMART c2h2final6 97 119 IPR013087 -
Spst9g02416 549 SMART c2h2final6 360 382 IPR013087 -
Spst9g02416 549 SMART c2h2final6 456 478 IPR013087 -
Spst9g02416 549 ProSitePatterns Zinc finger C2H2 type domain signature. 458 478 IPR013087 -
Spst9g02416 549 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 1 532 - -
Spst9g02416 549 MobiDBLite consensus disorder prediction 36 78 - -
Spst9g02416 549 ProSitePatterns Zinc finger C2H2 type domain signature. 11 31 IPR013087 -
Spst9g02416 549 Pfam C2H2-type zinc finger 456 479 - -
Spst9g02416 549 Pfam C2H2-type zinc finger 9 31 - -
Spst9g02416 549 Pfam C2H2-type zinc finger 360 384 - -
Spst9g02416 549 Pfam C2H2-type zinc finger 99 120 - -
Spst9g02416 549 Gene3D Classic Zinc Finger 1 123 - -
Spst9g02416 549 ProSiteProfiles Zinc finger C2H2 type domain profile. 456 478 IPR013087 -
Spst9g02416 549 SUPERFAMILY beta-beta-alpha zinc fingers 98 382 IPR036236 -
Spst9g02416 549 ProSitePatterns Zinc finger C2H2 type domain signature. 99 119 IPR013087 -
Spst9g02416 549 MobiDBLite consensus disorder prediction 36 65 - -
Spst9g02416 549 MobiDBLite consensus disorder prediction 147 175 - -
Spst9g02416 549 ProSiteProfiles Zinc finger C2H2 type domain profile. 9 36 IPR013087 -
Spst9g02416 549 ProSiteProfiles Zinc finger C2H2 type domain profile. 97 124 IPR013087 -
Spst9g02416 549 SUPERFAMILY beta-beta-alpha zinc fingers 6 34 IPR036236 -
Spst9g02416 549 Gene3D Classic Zinc Finger 357 478 - -
Spst9g02416 549 ProSiteProfiles Zinc finger C2H2 type domain profile. 360 387 IPR013087 -
Spst9g02416 549 ProSitePatterns Zinc finger C2H2 type domain signature. 362 382 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst9g02416 Spst-Chr9 57175516 57177165 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst9g02416 410 517 C2H2 Transcription Factor Family AT1G26610 38.333 1.20e-14 74.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Spst9g02416 zf-C2H2_6 4e-12 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst9g02416 - - vra:106757260 871.692