Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst9g02408 ATGGAACTCACCGAAGAACAACAACGTCAAGTGGAAGCGAACCGTGCAGCGGCGATTGCAAAACGCAAAGCGTTCTTAGAATCCAGGGCACAACAGGAAGGAGAACAACCTCACCGTGAAGGAGAAAATACCTCCAACCCCAACCCTTGGCACCTTTTCAAATGCCAAAAGTTCCCTAAACCCCAACCCGCAAAGTTCCTTGCCAGGCTCGAAATATGCTCCCCCGATTCCTTCTCCATCATACCTCTCCCTCTCCCTTCATTCCCCTTCCCCGGTGACCAGCATTGCCTCTCCACCCTAAACTCCGTTCTCTCACACGTGATGCCTTCGCATTTCACGCAGACCAGCGGAGGGGTCAAGGCCTGCGTGTTCAAACTGACGGAGTACCACGCCGTGCTCAGGCAGTTAAAGGCCGCGGCGGAGGCGCTGCACGTGGAGGAGATCCCCTGGGTGACTTTCAACGTGGTGGAGCGTCTCTCGCATTCTGTCGCGGTTGGTCTGTGGACGCCTGTGCGGCCGGAGCACTTGGTCGACGAGGAGGTGGAACGCCTGATCGCGAAGCTCCCGAGGACTCTCTTGGATGTGTTGCTTCCTTTCCAGCACGACGGACTGCGGTTTGCGTTAAGAAGAGGCGCGCGGTGCCTCATTGCTGATGACATGGGCCTTGGGAAAACGCTCCAGGCTATTGCTATTGCAGGGTGTTTTTTGGATGAAGGGTCTATACTCGTGGTTTGTCCTGCTGTGTTGCGGTTTTCATGGGCGGAGGAATTGGAGCGCTGGCTTCCTTTCTGCTTGCCGGCTGATATACATCTTGGTAATGTTTTGCTTTCTAAGATGAGTTGTGGATGCATAGATGATTGTACTGAGGATGGTTTGGCATTGGGAGATTTGAAGAGTAAAAGTACAAGATGGAATGATGATAAAGCTACCTGTACACATGGTATGGGGCATGGGAAGGGGAATGCACATAGGTGTATTCAGTTGATTGGAAGAGGGGAGAAAAAGGGAGGAGGGGAAGGAAAGAGAGAGAAGAGGCAGGAAAGATCTGATTGTTATACTGATGCTGACATTGCACTGATATTAGTAGCAGAAGGCGCCCCACTCACTATGCCCTTTTCATTAATAGCTTACATGATTGGCATGACCCATTGTGAAGCTGTTGTTTTTGGCCATCAAGACAACCCTATATATTTAACAAGAAGCCCCAAAGTTGTGGTTATTTCTTATACCATGCTTCATCGTCTAAGAAATAACATGCTTGAGCATGAATGGGCTCTCTTAATTGTTGATGAATCTCATCACGTGCGATGTACGAAGAAAACAGAACCTGGAGAGATACAGGCTGTTCTTGATGTTGCTTCGAAAGTCAAGCGTATAATTCTGCTATCAGGGACACCTTCTCTGTCAAGGCCTGGTTTGCTCGGGAAGACTAAATATGAGTTTGCAAAAACATATTGCGATTTAAAATATATTAAAGGAATCCAAGGAAAATATTTTGCGGATTATTCAAAGGGTGTGCGCTTGGAAGAGTTGAACGTGCTACTGAAGCAAACTGTTATGATAAGGCGTCTGAAGGAACATGTGATGCTACAGTTACCTCCCAAACGCCGGCAAATTATAAGACTGTTGATAAAGAGATCAGATATAATTGCTGCAAAAACTGCAATTGGGGTATTGAGTATTGATGCCACTGAGCAGGAAAGTGAAGACATACCTTTGGAAAATTTGGATGAACCTGATGGAAAGCTTTCTTATCAGGAACTTGGAATTGCAAAGCTTTCCGGTTTCCGTGAATGGCTTGCCCTACATCCAATTGTTGCAGGTTCAGAGAATGCTTCAAAAATGATAATTTTTGCTCATCACCACAAAGTTCTTGATGGAGTGCAGGAGTTTCTATGTGAGAAAGGGATAAGTTTTGTACGAATTGATGGAAATACTCTTGCCAGAGATAGGCAATCAGCAGTAGTCTCATTCCGGTCATCACCAGAGTTAGTATTAAAGAAGATCAATCCTGCTTTGCTTCTCATTTTCAACATTGTGATCCCACTGTTCATCTGCATCTGCTACTGCCAACCACTGTCTTTCACTACGGTGAGCGTTGGATCTGTTGCGTCTTGCCCCACAAGTAGCTTCTATGCTCATTGCACCAGATTGCATGTGGGTTTGCTGGCCTTCCTTGCCCTTGTTTCGACCCCTGGTTCTCAGTTTCCACCTTTGGCTGAGGTTGCGGTCAAAATTGCTGTAATAGGTATTCTAGCTGCAGGTTTTGGACTTGATTTCTCAACAGCACAAGATGTAGTGTTCTTGGAGCTACCACAGTGCCCAACTCTAATGCTCCAGTTTGTGCAAGTGTCAATCATGCAGCGAATGTCTCCCGATCTGGCTGAAGATAGAGCACATCGTCGAGGACAGACAAATGCGGTTAATGTTTACATATTCTGTGCAAAGGATACCTTGGATGAAACAAAATGGAAAAATTTGAACAAAAGTTTGCAACGTGTTTCATGTACAACTGATGGCAAATATGATGCGGTGAAAGAGATAAAGGTTGAGGGCATTTCTTATTTACACTCATCTTTTAAAAGTGATAATTGTGAAGAGCAATCTGCATACAAAGATGCAGTAGTTGAGACACAATTGGATGAGCAACATTCTGCAGTCAATTCAAATGAATCAGAGGAAAATCAAGATGATAAATCTGACGAGGGTTCTTTTGTTGATAAGTCAATTCAAAGTTCTAATATTTTGACTGATGATGTCTCCAGCCAAAATTTAAGCAAGGCTTCAGTTCTTGACACAACTTGTGATGTTGATGCTTTTGAAGTTGCGGAGAGATGTCCTGGAAAGAGTTTTGAAGACAGAGATCCAGTAATTGCGGATATGAAATCAATTTCAACAACAGAAGCAGATGGTGACCAGTCTGTTCATCCGGTTGAAGTCGATAGTCATTGTTCTTCTAATCAAGTTGATTTTTTGCGATTTGAGGTGAGCCCATACACTGGAAGGATCCACTTGTATACTTGCATTTTGGGTACTGATGAGAGACCACAGCCACTTTTTGAAAATTTTCGACCAGAGGAACTTGAGCTGTTGAGTTCTGTTGCTGCTTATGAGAAACAGGTTCATGATGAGAAACAGAAAATAGAGTTTGTATCTGTCAAGGACAACCCCACCTATAGGCATGCTCTTCTAGCTTTTGCGGAAGAATGGAAGAACTTGAGATCAATTGAACGAAGGAAGTTAATTGGAAAACCGTTACAACTCCCTTTGGCTGTTGAATTATGCTATTTGAGTGAAAGCAATAACCACAACAACAAAGGATTATTAAATGGTGGAAGTAAAAGACGAAAGACACCCTTAATGGAGATTAGCTATCCTTTACCAACAGATGCTGTTTGGAGAAAGGTTTATCTGCGAAGTGGACTCGGTAAGAAGGAAAAGGAATACACTCAAGGCTGGAGTGTGACAGATGAGCCTCTCTGTAAGCTTTGTCAAAAGCAGTGCCTTGGTAACAATGCCAAGAGACCTGAATTTCTAGAAGATCTTTTTTGTAATCTTGTCTGCTATGAGGAGTATCGCATGAGAACTAGCAACAGATTCCTTCGTGAGCTTGTTAAGGATACAAGACCTTTGTCATTGGAAAGGCGGCGAGACTACATAGAGAAAGTAGCACCAAATGTTGCTAAACGGAAGAACATGCTTGAGAAACTTGTCAATGAACCAACTGAAGGCAATGCATGGCATGCTGACCATATTGTTCCAGTATATCAAGGAGGAGGTGAATGTAAGCTAGAGAATATGAGGACTCTTTGTGTTGCCTGCCATTATGATGTTACTGCCGCACAATGTGCTGAACGACGAAAAGCAAGAACAAATGCGAAGAAAAAACTGAAAGAGTTTATGAAGAGCATGAAAAATGGTATTATGGGTTCTGCTGGCACTAATATCAAGGTATCGTTGATAATAATGGAAAGCGATTAG 3981 0.4386 MELTEEQQRQVEANRAAAIAKRKAFLESRAQQEGEQPHREGENTSNPNPWHLFKCQKFPKPQPAKFLARLEICSPDSFSIIPLPLPSFPFPGDQHCLSTLNSVLSHVMPSHFTQTSGGVKACVFKLTEYHAVLRQLKAAAEALHVEEIPWVTFNVVERLSHSVAVGLWTPVRPEHLVDEEVERLIAKLPRTLLDVLLPFQHDGLRFALRRGARCLIADDMGLGKTLQAIAIAGCFLDEGSILVVCPAVLRFSWAEELERWLPFCLPADIHLGNVLLSKMSCGCIDDCTEDGLALGDLKSKSTRWNDDKATCTHGMGHGKGNAHRCIQLIGRGEKKGGGEGKREKRQERSDCYTDADIALILVAEGAPLTMPFSLIAYMIGMTHCEAVVFGHQDNPIYLTRSPKVVVISYTMLHRLRNNMLEHEWALLIVDESHHVRCTKKTEPGEIQAVLDVASKVKRIILLSGTPSLSRPGLLGKTKYEFAKTYCDLKYIKGIQGKYFADYSKGVRLEELNVLLKQTVMIRRLKEHVMLQLPPKRRQIIRLLIKRSDIIAAKTAIGVLSIDATEQESEDIPLENLDEPDGKLSYQELGIAKLSGFREWLALHPIVAGSENASKMIIFAHHHKVLDGVQEFLCEKGISFVRIDGNTLARDRQSAVVSFRSSPELVLKKINPALLLIFNIVIPLFICICYCQPLSFTTVSVGSVASCPTSSFYAHCTRLHVGLLAFLALVSTPGSQFPPLAEVAVKIAVIGILAAGFGLDFSTAQDVVFLELPQCPTLMLQFVQVSIMQRMSPDLAEDRAHRRGQTNAVNVYIFCAKDTLDETKWKNLNKSLQRVSCTTDGKYDAVKEIKVEGISYLHSSFKSDNCEEQSAYKDAVVETQLDEQHSAVNSNESEENQDDKSDEGSFVDKSIQSSNILTDDVSSQNLSKASVLDTTCDVDAFEVAERCPGKSFEDRDPVIADMKSISTTEADGDQSVHPVEVDSHCSSNQVDFLRFEVSPYTGRIHLYTCILGTDERPQPLFENFRPEELELLSSVAAYEKQVHDEKQKIEFVSVKDNPTYRHALLAFAEEWKNLRSIERRKLIGKPLQLPLAVELCYLSESNNHNNKGLLNGGSKRRKTPLMEISYPLPTDAVWRKVYLRSGLGKKEKEYTQGWSVTDEPLCKLCQKQCLGNNAKRPEFLEDLFCNLVCYEEYRMRTSNRFLRELVKDTRPLSLERRRDYIEKVAPNVAKRKNMLEKLVNEPTEGNAWHADHIVPVYQGGGECKLENMRTLCVACHYDVTAAQCAERRKARTNAKKKLKEFMKSMKNGIMGSAGTNIKVSLIIMESD 1326
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst9g02408 1326 MobiDBLite consensus disorder prediction 883 905 - -
Spst9g02408 1326 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 531 872 IPR027417 -
Spst9g02408 1326 PANTHER DNA ANNEALING HELICASE AND ENDONUCLEASE ZRANB3 FAMILY MEMBER 386 1296 - -
Spst9g02408 1326 MobiDBLite consensus disorder prediction 22 49 - -
Spst9g02408 1326 Gene3D - 172 280 IPR038718 -
Spst9g02408 1326 CDD HNHc 1239 1279 IPR003615 -
Spst9g02408 1326 MobiDBLite consensus disorder prediction 26 40 - -
Spst9g02408 1326 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 180 470 IPR027417 -
Spst9g02408 1326 MobiDBLite consensus disorder prediction 887 905 - -
Spst9g02408 1326 Gene3D - 489 908 IPR027417 -
Spst9g02408 1326 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 205 484 IPR014001 -
Spst9g02408 1326 Pfam SNF2-related domain 213 545 IPR000330 GO:0005524|GO:0140658
Spst9g02408 1326 CDD SF2_C_SNF 591 814 - -
Spst9g02408 1326 Gene3D - 1194 1306 - -
Spst9g02408 1326 Gene3D - 371 474 IPR038718 -
Spst9g02408 1326 Pfam HNH endonuclease 1245 1276 IPR002711 GO:0003676|GO:0004519|GO:0008270
Spst9g02408 1326 SMART ultradead3 192 491 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst9g02408 Spst-Chr9 56996266 57017020 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Spst9g02408 SNF2_N 1.9e-09 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst9g02408 K25861 - mtr:120579634 1039.25