LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Spst9g02406	AGCAAGTTGTCGGCTGAGACACAAGCTGGACCATGTATTCTGCTTAGGGCTATTCCATGTGTGGTAGGCTTCGGCTTCATCGCTGTGACAATTGCTTTTCATCATAACATGGAGGTTACGTCTAATTATGAAGAGATTGCAGAGCTGATATGGGAAAACGGCCACGTATCCATGCATGGCCTTGGTGGGCTTCAACCCACTACTACTCAGGAAAAGCCCACAGTGAGCAGGGCCCACAACACATTAGAGTCAATTGTTGAACATGCCACGTGGCAACCTTATCAACCGTCGAAATTCACTGGGGAAGGCCATGACTCTGGTACGAATGATAGTATAATAAACTCCATTGGTGCACCCTACGGTGAGGTTCAAGCTATGCCCTCGTTGACGAAGAAGAGAGCGTGGTCCAACACCAACGACGACAACAAGAAGAACATGTTGGAAGAATGTGACATCCTGAGTGGTTGTGCTAGTGCTGGTGCCACCTTTTGTAGGGACAATGAAACAACCATGATGACATGGGCCTCTCTTGAATCTGGTCGGAGCTTGAAGACCATGGAGGAAGATTCACCTTGTCACTGTGGATCGGAAATTCGAGATAATCAAGATGACACAAACAGCAAAGCAGAAATAGGCCCCAGAAGGCGAGGTCGAACTGCTGCCATCCATAACCAATCTGAGCGGAAAAGAAGAGATAGAATTAATCAGAAGATGAAGGCCTTGCAGAGGTTGGTGCCTAATGCAAATAAGACAGATAAAGCTTCAATGTTGGATGAGGTGATTAACTACTTGAAGCAGCTTCAAGCACAGATCCAAATGATGAACATGACAAGCATGCCCCAAATGATGGTGCCTCTGGCCATGCAACAGCAGCTGCAGATGTCAATGCTAGCCAGAATGGGTGCTGGTGCTGGGTTTGGCATGGGAATGGGGATGATGAACATAAACAACATAGCAGCAGCCCAGACAAGTGGCCCAAGGTCACTCCCCCAACTCCTTCAACAAACACCAACAGTTGGAGCTCCACCTCCTGCCACTGCTCCTGTCTTTTTTGCCCCTTCCTTCATGATGCCTCCCATGATCCAAGCACATGCCCCTGCACATCCAAAGCCTCAACCTGCATCCTCAGGCACCATTGCATCAATTCCTTTGCCTCATCCATACAGTGCTAATCTCACCCAACAACATGGCAGCACTTTATCAACAACAGATGAGTCACAGCAATCATCAGGCCTTCAGCAGCAGCATGTTCCAACCCCAGAAGCAAAGCCGTTGAGAATAAATCAAGCCAAACACTTGTGA	1302	0.4808	SKLSAETQAGPCILLRAIPCVVGFGFIAVTIAFHHNMEVTSNYEEIAELIWENGHVSMHGLGGLQPTTTQEKPTVSRAHNTLESIVEHATWQPYQPSKFTGEGHDSGTNDSIINSIGAPYGEVQAMPSLTKKRAWSNTNDDNKKNMLEECDILSGCASAGATFCRDNETTMMTWASLESGRSLKTMEEDSPCHCGSEIRDNQDDTNSKAEIGPRRRGRTAAIHNQSERKRRDRINQKMKALQRLVPNANKTDKASMLDEVINYLKQLQAQIQMMNMTSMPQMMVPLAMQQQLQMSMLARMGAGAGFGMGMGMMNINNIAAAQTSGPRSLPQLLQQTPTVGAPPPATAPVFFAPSFMMPPMIQAHAPAHPKPQPASSGTIASIPLPHPYSANLTQQHGSTLSTTDESQQSSGLQQQHVPTPEAKPLRINQAKHL	433

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Annotation information

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Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Spst9g02406	433	MobiDBLite	consensus disorder prediction	387	417	-	-
Spst9g02406	433	MobiDBLite	consensus disorder prediction	186	232	-	-
Spst9g02406	433	CDD	bHLH_AtPIF_like	218	280	IPR047265	-
Spst9g02406	433	ProSiteProfiles	Myc-type, basic helix-loop-helix (bHLH) domain profile.	218	267	IPR011598	GO:0046983
Spst9g02406	433	PANTHER	TRANSCRIPTION FACTOR PIF1-RELATED	47	415	IPR031066	-
Spst9g02406	433	Gene3D	-	214	278	IPR036638	GO:0046983
Spst9g02406	433	SUPERFAMILY	HLH, helix-loop-helix DNA-binding domain	216	278	IPR036638	GO:0046983
Spst9g02406	433	Coils	Coil	224	244	-	-
Spst9g02406	433	MobiDBLite	consensus disorder prediction	362	433	-	-
Spst9g02406	433	SMART	finulus	224	273	IPR011598	GO:0046983

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Spst9g02406	Spst-Chr9	56964665	56971529	Dispersed/Transposed

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Spst9g02406	45	280	Basic Helix-Loop-Helix Transcription Factor Gene Family	AT4G00050	37.805	5.25e-35	132

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Transcription factors information

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Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	bHLH	Spst9g02406		HLH	6.3e-13	No_clan

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Spst9g02406	-		-	gmx:102667566	447.588

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