Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst9g02406 AGCAAGTTGTCGGCTGAGACACAAGCTGGACCATGTATTCTGCTTAGGGCTATTCCATGTGTGGTAGGCTTCGGCTTCATCGCTGTGACAATTGCTTTTCATCATAACATGGAGGTTACGTCTAATTATGAAGAGATTGCAGAGCTGATATGGGAAAACGGCCACGTATCCATGCATGGCCTTGGTGGGCTTCAACCCACTACTACTCAGGAAAAGCCCACAGTGAGCAGGGCCCACAACACATTAGAGTCAATTGTTGAACATGCCACGTGGCAACCTTATCAACCGTCGAAATTCACTGGGGAAGGCCATGACTCTGGTACGAATGATAGTATAATAAACTCCATTGGTGCACCCTACGGTGAGGTTCAAGCTATGCCCTCGTTGACGAAGAAGAGAGCGTGGTCCAACACCAACGACGACAACAAGAAGAACATGTTGGAAGAATGTGACATCCTGAGTGGTTGTGCTAGTGCTGGTGCCACCTTTTGTAGGGACAATGAAACAACCATGATGACATGGGCCTCTCTTGAATCTGGTCGGAGCTTGAAGACCATGGAGGAAGATTCACCTTGTCACTGTGGATCGGAAATTCGAGATAATCAAGATGACACAAACAGCAAAGCAGAAATAGGCCCCAGAAGGCGAGGTCGAACTGCTGCCATCCATAACCAATCTGAGCGGAAAAGAAGAGATAGAATTAATCAGAAGATGAAGGCCTTGCAGAGGTTGGTGCCTAATGCAAATAAGACAGATAAAGCTTCAATGTTGGATGAGGTGATTAACTACTTGAAGCAGCTTCAAGCACAGATCCAAATGATGAACATGACAAGCATGCCCCAAATGATGGTGCCTCTGGCCATGCAACAGCAGCTGCAGATGTCAATGCTAGCCAGAATGGGTGCTGGTGCTGGGTTTGGCATGGGAATGGGGATGATGAACATAAACAACATAGCAGCAGCCCAGACAAGTGGCCCAAGGTCACTCCCCCAACTCCTTCAACAAACACCAACAGTTGGAGCTCCACCTCCTGCCACTGCTCCTGTCTTTTTTGCCCCTTCCTTCATGATGCCTCCCATGATCCAAGCACATGCCCCTGCACATCCAAAGCCTCAACCTGCATCCTCAGGCACCATTGCATCAATTCCTTTGCCTCATCCATACAGTGCTAATCTCACCCAACAACATGGCAGCACTTTATCAACAACAGATGAGTCACAGCAATCATCAGGCCTTCAGCAGCAGCATGTTCCAACCCCAGAAGCAAAGCCGTTGAGAATAAATCAAGCCAAACACTTGTGA 1302 0.4808 SKLSAETQAGPCILLRAIPCVVGFGFIAVTIAFHHNMEVTSNYEEIAELIWENGHVSMHGLGGLQPTTTQEKPTVSRAHNTLESIVEHATWQPYQPSKFTGEGHDSGTNDSIINSIGAPYGEVQAMPSLTKKRAWSNTNDDNKKNMLEECDILSGCASAGATFCRDNETTMMTWASLESGRSLKTMEEDSPCHCGSEIRDNQDDTNSKAEIGPRRRGRTAAIHNQSERKRRDRINQKMKALQRLVPNANKTDKASMLDEVINYLKQLQAQIQMMNMTSMPQMMVPLAMQQQLQMSMLARMGAGAGFGMGMGMMNINNIAAAQTSGPRSLPQLLQQTPTVGAPPPATAPVFFAPSFMMPPMIQAHAPAHPKPQPASSGTIASIPLPHPYSANLTQQHGSTLSTTDESQQSSGLQQQHVPTPEAKPLRINQAKHL 433
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst9g02406 433 MobiDBLite consensus disorder prediction 387 417 - -
Spst9g02406 433 MobiDBLite consensus disorder prediction 186 232 - -
Spst9g02406 433 CDD bHLH_AtPIF_like 218 280 IPR047265 -
Spst9g02406 433 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 218 267 IPR011598 GO:0046983
Spst9g02406 433 PANTHER TRANSCRIPTION FACTOR PIF1-RELATED 47 415 IPR031066 -
Spst9g02406 433 Gene3D - 214 278 IPR036638 GO:0046983
Spst9g02406 433 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 216 278 IPR036638 GO:0046983
Spst9g02406 433 Coils Coil 224 244 - -
Spst9g02406 433 MobiDBLite consensus disorder prediction 362 433 - -
Spst9g02406 433 SMART finulus 224 273 IPR011598 GO:0046983
Spst9g02406 433 Pfam Helix-loop-helix DNA-binding domain 223 268 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst9g02406 Spst-Chr9 56964665 56971529 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst9g02406 45 280 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G00050 37.805 5.25e-35 132
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Spst9g02406 HLH 6.3e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst9g02406 - - gmx:102667566 447.588