Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Spst9g02393 | ATGGATGATTCAGTGTTAGATGTTGATCAGGTGGAAAATCTCATTAAATTTTGTCCAACCAAAGAGGAGATAGAGCTTTTAAAGGGATACGCTGGTGACAAGGAGAATTTGGGGAAGTGTGAAAAGTATTTTTTGGAGCTGATGAAAGTGCCAAGAGTGGAGTCAAAATTTAGAGTATTCTCTTTCAAAATTCAGTTTGGAACCCAGATTACAGAGTTTAAGAAGAGTTTACACACAGTGAACTCTGCTTGTGAAGAGGTTCGAAACTCATTCAAACTAAAGGAGATTATGAAGAAAATTCTTTATTTGGGTAATACATTGAATCAAGGGACAGCAAGGGGATCTGCTGTTGGATTCAAGTTAGATAGCCTCTTAAAACTAACCGACACTCGTGCTTCAAACAGTAAAATGACACTCATGCACTTTCTTTGCAAGGTCCTAGCTGAAAGATTTCCTGAACTCCTTGATTTTCACCTTGACCTTGTTAGCTTGGAAGCAGCCACTAAGATACAATTGAAGTCATTAGCAGAAGAAATGCAGGCAATCATCAGGGGATTAGAAAAGGTTAAACAGGAACTTGCTGCATCTGAAAATGATGGCCTTGTGTCTGAAGTTTTTCGTAAGACATCGAAGGAATTCATTGCTGTTGCAGAGTCAGAGGTGGCATCAGTAACAAACCTATATTCTGTGGTGGGTAGAAATGCAGATGCACTTGCCCTATATTTTGGTGAGGATCCTGCCCGTTGTCCTTTTGAGCAAGTGACTGCAACTCTCTTGAATTTCACAAGGTTGTTTCTGAAAGCACATGAAGAGAATTGCAAACAAACGGAGTTAGAGAAAAAGAAAGCTGATAAAGAGGCTGAAATGGAGAAGGCTAAAGGCATTAACTTGATAAGGAAGACTGGAAAAGATGAAGAAGAAGAAAGTTGA | 930 | 0.3925 | MDDSVLDVDQVENLIKFCPTKEEIELLKGYAGDKENLGKCEKYFLELMKVPRVESKFRVFSFKIQFGTQITEFKKSLHTVNSACEEVRNSFKLKEIMKKILYLGNTLNQGTARGSAVGFKLDSLLKLTDTRASNSKMTLMHFLCKVLAERFPELLDFHLDLVSLEAATKIQLKSLAEEMQAIIRGLEKVKQELAASENDGLVSEVFRKTSKEFIAVAESEVASVTNLYSVVGRNADALALYFGEDPARCPFEQVTATLLNFTRLFLKAHEENCKQTELEKKKADKEAEMEKAKGINLIRKTGKDEEEES | 309 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Spst9g02393 | 309 | ProSiteProfiles | Formin homology-2 (FH2) domain profile. | 1 | 291 | IPR015425 | - | |
| Spst9g02393 | 309 | PANTHER | FORMIN-J | 1 | 293 | - | - | |
| Spst9g02393 | 309 | Pfam | Formin Homology 2 Domain | 1 | 265 | IPR015425 | - | |
| Spst9g02393 | 309 | Gene3D | Formin, FH2 domain | 1 | 296 | IPR042201 | - | |
| Spst9g02393 | 309 | Coils | Coil | 172 | 199 | - | - | |
| Spst9g02393 | 309 | SUPERFAMILY | Formin homology 2 domain (FH2 domain) | 1 | 293 | - | - | |
| Spst9g02393 | 309 | MobiDBLite | consensus disorder prediction | 283 | 309 | - | - | |
| Spst9g02393 | 309 | Coils | Coil | 266 | 295 | - | - | |
| Spst9g02393 | 309 | SMART | it6_source | 1 | 309 | IPR015425 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Spst9g02393 | Spst-Chr9 | 56725349 | 56730588 | Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Spst9g02393 | 1 | 304 | FH2 protein (formin) Gene Family | AT5G07740 | 80.921 | 3.69e-166 | 500 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Spst9g02393 | - | - | pvu:PHAVU_009G184800g | 573.163 |