Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst9g02385 ATGGAGCCTGGTGAGGAGATTAATTTGAATATAGAAAGTGGTGGTGGGAATAATGGGAAGAGTAGTGATGGGTTCATTGATAGAAGTAAGGTACGGATTTTGTTGTGCGATAACGATTCCAAGAGTTCTCAAGAGGTTTTCACGCTTCTTTTGAGGTGTTCTTATCAGGAGGGGCAACATATAGATATCATACTGGCTGAACTGGACCTTCCAACAAAGAAGGGCATGAAGATGTTGAAGTACATAGCACGGGATAAAGAGTTCCGCAGAATTCCTGTTATAATGATGTCCGCACAAGATGAGGTATCCGTTGTTGTTAAGTGCTTGAGACTTGGAGCAGCTGACTATCTAGTAAAGCCTTTACGCACTAATGAACTATTAAATTTGTGGACTCACATGTGGAGACGGAGGCGCATGCTTGGACTTGTGGAGAAGAACATCTTGAATTATGACTTTGATCTGGTAGCATCAGACCCTAGTGATGCCAATACAAACAGTACCACCTTGTTCTCTGATGACACAGATGAGAAGTCCAAGAGAAGCACCAATCCAGAGGTGGGATTATCAGTCCAAGAAGAACAAGAGTTAGTTCATAATGTGTTAAGTGGGGTAGAGTTTGATCCATTCCATTTTGTATATGCAAATAAGTACAAATTACCTCCCCTGACTTTTGATGACTTCCTCCTCTATCTCTTGGCTCGGTTTCGATGGTCGAAATTACTTGCAATAGATCTAATAGATCAAAGGATTCTTAAGAGGATGTCGAGATTAGACCACTATGAGGGTGGAGGACTAGGAGCCGAATGTTATTCATTGACATTTAGTGTGTGTCTCCTCCACATAGATCCAAAGTCGACTATTGCAAATGTTGCTGCTGTTGAGGAACCTCTTGATGCTCGTGCATCAGAACATGGGCCTGATGTCAATGGATTTAATGATAACCGAACAGCACATTTTTCATCTGGTCCGAAGAAGAGTGAACTAAGGATAGGGGAGTCATCAGCCTTTTTCACGTATGTTAAAGCATCTATACTGAAGAGCAACTTTGAAGGGGTTGTTAATGTAGACAATAATGGTGCTGCACATGTGAGAATGGAAGTTATGCATCAAGCATGTGCTCAACAAGGGGTTAACGACTTTCAAACACGTGAAAATGGAGAGACATGTGAAAGTCAATCGCAAGATGACTTGCCCAGTAGCAGCAGTGTACCTGATTCTCTCTCTATTGAAAGGTCTTGTACTCCACCTGCATCAATGGAAGTTTCACCTCAGAAGCACAAAGAAGAAAATTTCCATCAGGGTGTGATGCATCCAAGAAATGGAACTCATTGTTCTGAGCATGAAGTATCTGGCATGGCTTCCCAACATGCTTATCCATATTATATTTCAGGAGTTGTTAATCATGTTATGATGCCTTCATCAGCACAAATGTATCACCAAAAGAATATGCAGGACCTACAGAATCATCCTAGTACAGCTATGATTGCACAATACAGTCATCTTCCCCAAGGTGGTCCTCATGGAACGGGGATGACATCTTTCCCATACTACCCAATGAGTATATGCTTACAGCCTGGTCAGGTTCCTCAACCCCATTCATGGCCATCATTTGGAAGCTCAAGTTCATCAGAACCAAAATTAAGTAAAGTTGACAGGAGAGAAGCAGCACTGATGAAGTTCAGACAGAAAAGGAAAGAGCGCTGCTTTGATAAGAAAATTAGGTATGTTAACCGGAAACGACTTGCTGAAAGGCGGCCTCGAGTGAGAGGTCAGTTTGTCAGGAAACTAAACAGTGCCAATGTGGATCTCAATGGACAGCCTGCATCAATTGAATATGATGAAGACGAAGAAGAGGATGAAGATGACCAGGGTAGAAGAGATTCTTCTCCTGAGGATTCTTGA 1902 0.4217 MEPGEEINLNIESGGGNNGKSSDGFIDRSKVRILLCDNDSKSSQEVFTLLLRCSYQEGQHIDIILAELDLPTKKGMKMLKYIARDKEFRRIPVIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMWRRRRMLGLVEKNILNYDFDLVASDPSDANTNSTTLFSDDTDEKSKRSTNPEVGLSVQEEQELVHNVLSGVEFDPFHFVYANKYKLPPLTFDDFLLYLLARFRWSKLLAIDLIDQRILKRMSRLDHYEGGGLGAECYSLTFSVCLLHIDPKSTIANVAAVEEPLDARASEHGPDVNGFNDNRTAHFSSGPKKSELRIGESSAFFTYVKASILKSNFEGVVNVDNNGAAHVRMEVMHQACAQQGVNDFQTRENGETCESQSQDDLPSSSSVPDSLSIERSCTPPASMEVSPQKHKEENFHQGVMHPRNGTHCSEHEVSGMASQHAYPYYISGVVNHVMMPSSAQMYHQKNMQDLQNHPSTAMIAQYSHLPQGGPHGTGMTSFPYYPMSICLQPGQVPQPHSWPSFGSSSSSEPKLSKVDRREAALMKFRQKRKERCFDKKIRYVNRKRLAERRPRVRGQFVRKLNSANVDLNGQPASIEYDEDEEEDEDDQGRRDSSPEDS 633
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst9g02385 633 MobiDBLite consensus disorder prediction 383 419 - -
Spst9g02385 633 SUPERFAMILY CheY-like 27 140 IPR011006 -
Spst9g02385 633 MobiDBLite consensus disorder prediction 528 545 - -
Spst9g02385 633 ProSiteProfiles CCT domain profile. 553 595 IPR010402 GO:0005515
Spst9g02385 633 MobiDBLite consensus disorder prediction 528 550 - -
Spst9g02385 633 MobiDBLite consensus disorder prediction 165 186 - -
Spst9g02385 633 MobiDBLite consensus disorder prediction 383 428 - -
Spst9g02385 633 SMART REC_2 31 130 IPR001789 GO:0000160
Spst9g02385 633 Pfam CCT motif 553 595 IPR010402 GO:0005515
Spst9g02385 633 PANTHER TWO-COMPONENT RESPONSE REGULATOR 31 200 IPR045279 GO:0009736
Spst9g02385 633 Pfam Response regulator receiver domain 57 128 IPR001789 GO:0000160
Spst9g02385 633 Gene3D - 34 204 - -
Spst9g02385 633 MobiDBLite consensus disorder prediction 609 625 - -
Spst9g02385 633 ProSiteProfiles Response regulatory domain profile. 1 134 IPR001789 GO:0000160
Spst9g02385 633 MobiDBLite consensus disorder prediction 597 633 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst9g02385 Spst-Chr9 56541237 56547179 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst9g02385 7 632 Response Regulator Gene Family AT5G61380 44.570 1.45e-162 478
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Pseudo ARR-B Spst9g02385 Response_reg 1e-13 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst9g02385 K12127 - gmx:100271889 583.948
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst9g02385 9 56541237 56547179 Spst9g02385 9 56541237 56547179 ECH