Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst9g02375 ATGGGAAGGACTCCTTGCTGCAGTCACGAGGAACTCAGAAAAGGTGCATGGACGGCTCAAGAAGACCAGAAACTCGTTGCTTACATTCAGAAAAATGGCACTGGAAGCTGGCGTACCTTGCCTCAGAAAGCTGGTCTTCAAAGATGTGGAAAGAGTTGCAGGCTGAGATGGTTTAATTACCTCCGACCAGACATTAAGAGAGGAAAATTGAGCCCAGAAGAAGAGCAGACAATCATTAAACTTCAGGCGGTTCTTGGAAACAGGTGGTCAAGTATTGCAAAGCATTTACAAGGGCGAACTGATAACGAAATCAAGAACTATTGGAACTCATATCTGAAAAGGCACTATGATCCATCGACTTCTAAACCAATTAGCACTGATGGTTCCACAGAATCAAAATCCACTGACTTGTGCAAGGTTCAATCAACGGAAACTGATTTCCATGAACCAAGTGCCACTACACCCCAATCTCATGAATCCAGCATATCAAAGTCAATGTCATCTTCAACTCAGCTTCTCAACAAAGTTGCTAGTAAAATTCTTGCATCTGGGTTACTTGAAGCAATTAAATCAGGTCAACCTGTTGTTGCTGGGAACAGCAACAGCGAAAGTATGGTGAAAACTGGAACTGAGCTAGAAAAGAACAATAATAGAGATCCCCTTGTGCCTAATTTGACCTCGTCAAGTCATTCAGTAACTTCTGCTCAGCTACTGAACAAGATGGCTACTTCACTCCCTCATAAAGTTCATGGCCTTGAATCTGTCAAAGCTATTTTTTCAAAATTGATGGAAAGTAGTGAAAAGGGTGACACTGCTAGTGATGGTAGCTTTATTAGCAGTGATCAAGTTGGAGATTGTTTGAATGCTCTGAACTCTTTTGAGGATGAACCACACATAACCGAAATGGTTGGGTCCCCTTCTAGTCCTTCACTAATATTCAATCAAGCGACCACACCCTCATGCTTTTCAGACAATGCAGATAATTGGCAATGCATTTCATCTACCAATGTTCCCTTCAGAAATGGTGCTCCAAGGGGTGGTGAGTGCAGTGTTTCTGAACTCAACTTGGGCGAGTCTTCCAGTTCAACATCGTCCTTCCTGTTTGAGAATGCTGATCTTGGAACGTGTGATGATGAAATAAGCAAGTACATTCTGTATTTGTAA 1164 0.4227 MGRTPCCSHEELRKGAWTAQEDQKLVAYIQKNGTGSWRTLPQKAGLQRCGKSCRLRWFNYLRPDIKRGKLSPEEEQTIIKLQAVLGNRWSSIAKHLQGRTDNEIKNYWNSYLKRHYDPSTSKPISTDGSTESKSTDLCKVQSTETDFHEPSATTPQSHESSISKSMSSSTQLLNKVASKILASGLLEAIKSGQPVVAGNSNSESMVKTGTELEKNNNRDPLVPNLTSSSHSVTSAQLLNKMATSLPHKVHGLESVKAIFSKLMESSEKGDTASDGSFISSDQVGDCLNALNSFEDEPHITEMVGSPSSPSLIFNQATTPSCFSDNADNWQCISSTNVPFRNGAPRGGECSVSELNLGESSSSTSSFLFENADLGTCDDEISKYILYL 387
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst9g02375 387 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Spst9g02375 387 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Spst9g02375 387 CDD SANT 16 61 IPR001005 -
Spst9g02375 387 MobiDBLite consensus disorder prediction 118 166 - -
Spst9g02375 387 FunFam MYB-related transcription factor 13 66 - -
Spst9g02375 387 Gene3D - 69 141 - -
Spst9g02375 387 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Spst9g02375 387 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Spst9g02375 387 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Spst9g02375 387 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Spst9g02375 387 CDD SANT 71 112 IPR001005 -
Spst9g02375 387 SMART sant 13 63 IPR001005 -
Spst9g02375 387 SMART sant 66 114 IPR001005 -
Spst9g02375 387 SUPERFAMILY Homeodomain-like 12 108 IPR009057 -
Spst9g02375 387 Gene3D - 14 66 - -
Spst9g02375 387 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 215 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst9g02375 Spst-Chr9 56295666 56297705 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst9g02375 1 210 MYB Transcription Factor Family AT5G60890 50.459 5.25e-64 204
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Spst9g02375 Myb_DNA-binding 1.2e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst9g02375 K09422 - gmx:100775267 565.844