Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst9g02358 ATGGGTTCTTTTGTTTCAGGAACAATGGGGGAGCACGTGGTTTTATCTGTTGTTGAGCCTCTTCTTGCAGCACCTGCAACTGTGCAACCCCAGCATGATGGGGATGCCCAAGGTTCACCCATTGAGGGTGCTACTCAAGTCAATGATGTTGGGGAATGTGATACACTGCAAGAACATGAACAAGAACAAGAAAAAGATCTTACCCAAATGGCGGAGTGTCGCATTTGCCAGGAAGATGATACCCTTCAAAATTTGGACATACCCTGTTCTTGCAGTGGAACCTTGAAGTTTGCTCATAGGGGATGTGTTCAACTATGGTGCTACGAGAAGGGTGATACAATTTGTGAGATCTGCCATCAGCCATTCAATCCCGGCTATTCTGCAACACCAGCTGTCTACCATCGTGGAGATACTTCAATTGATATCAGTGGTGACTGGGCGACCTCTAGTATTCCTTTTGATTTGCACAATTCTCGACTTTTGGCTACTGGTGCTGTAGAGCACCAAGTTCAGGAGACTCATGAAGATTATGTCTATGCTGCTGGCACTGGTGGAACTACATTGTGGCAGTCTGTTGGTCTAATTTTAATGGCTGTTTTACTACTGAGGCATGCTGCTCCCCTCTTCAATGTTGATGTGGAGAAAGTTTTAACATATTTTTATTTTTTCTTTCTTTGGGCGGCTGCTGTTGTCCTTTCTTGCTATCTTTTGGCCTGGATAATTCGCATAATACAGCATCAAAGGCAAAGACAACAAACACCTGAAGAACTTGCATTTATGCTACAAACAGAGGAATAA 798 0.4386 MGSFVSGTMGEHVVLSVVEPLLAAPATVQPQHDGDAQGSPIEGATQVNDVGECDTLQEHEQEQEKDLTQMAECRICQEDDTLQNLDIPCSCSGTLKFAHRGCVQLWCYEKGDTICEICHQPFNPGYSATPAVYHRGDTSIDISGDWATSSIPFDLHNSRLLATGAVEHQVQETHEDYVYAAGTGGTTLWQSVGLILMAVLLLRHAAPLFNVDVEKVLTYFYFFFLWAAAVVLSCYLLAWIIRIIQHQRQRQQTPEELAFMLQTEE 265
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst9g02358 265 Pfam RING-variant domain 73 118 IPR011016 GO:0008270
Spst9g02358 265 PANTHER RING/FYVE/PHD ZINC FINGER DOMAIN-CONTAINING 9 251 IPR033275 -
Spst9g02358 265 SMART ringv_2 72 119 IPR011016 GO:0008270
Spst9g02358 265 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 66 124 IPR013083 -
Spst9g02358 265 ProSiteProfiles Zinc finger RING-CH-type profile. 65 125 IPR011016 GO:0008270
Spst9g02358 265 CDD RING_CH-C4HC3_MARCH 73 119 - -
Spst9g02358 265 Pfam Protein of unknown function (DUF3675) 124 241 IPR022143 -
Spst9g02358 265 SUPERFAMILY RING/U-box 71 123 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst9g02358 Spst-Chr9 55845053 55848273 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst9g02358 72 119 C3H Transcription Factor Family AT2G37950 41.176 6.84e-06 44.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst9g02358 - - gmx:100795900 365.54
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst9g02358 9 55845053 55848273 Spst9g02358 9 55845053 55848273 ECH