Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst9g02350 ATGGAGGGAGGTGATGACTTCAACCACCACCACCACCATCACCATCACCACCACCGAAACTTCCCATTCCAACTCCTCGAGAAGAAAGAAGACCAAGACCCGTCTTCTTGCTCCACCTCATCCCCATACCCTTCCCTGGCCATCTCAGCAGAACCCTCCACTTCCAACTCAACCCGATCCAACAACAACATCAACCTCCTCCCCACACCCTCTGAACCCTCCCCCAAAAAGCCTCCTGCCAAGAGAACCTCAACCAAAGACCGCCACACCAAAGTCGATGGTCGCGGTCGTCGAATTCGAATGCCGGCTCTCTGCGCCGCCAGAGTGTTCCAACTCACGCGTGAGCTGGGACACAAGTCTGATGGCGAGACCATAGAGTGGCTCCTCCAGCAGGCGGAGCCAGCTGTCATCGCCGCCACGGGCACCGGCACCATCCCCGCTAACTTCACATCCCTTAACATATCTCTTCGGAGCTCAGGCTCCTCCATGTCTGTCCCCTCCCAGCTACGATCCAACTACTACAATTCAAACTTTTCTCTCCAACCCCGGAGAAGCCTATTCCTTGAAAACACCAATACTTCCACAACACTCCTCAATTTTCAATCCAACAACCCCATTTCCACTTCCGTGTTCCAACCCAAGCACGAATTGCGCGATTCATCATCCCTAGACTTGTCGTCGGAGAACAACGAAGAGGGTTTGGGAAGGAAAAGAAGACCCTCCGAGCAAGACCTATCTTCAGCTATGCAACACCAAGTCGGAAGCTATTTGATGCAATCAAGCACCTCAGGGACAATTCCGGCGAGCCATGCTCAAATTTCGGCGAATATATGGATGGTAGCGAATTCCAATAGCCAAGGTGTGAGTGGCGAAGCTCCTTTGTGGACATTCCCGGGTGTGAGTAAGAGTGCTTTGTATAGAGGAAACATGTCAAGTGGGTTGCATTTCATGAACTTTCCTACCCCTATGGCCCTTTTGCCTGGTCAAGAATTAGGGTCTTCTGGGATTGGTGGGAACATCAACGACGGGCATTTGAGCATGCTTTCGGGGCTTAACCCTTACCGGGCGATGATCGGCGTTTCCGAGTCTCAGGCGAGTGAGTCACATTCACATCACGGTGGAAGCGAGGATCAGCATGATGATAATTGA 1149 0.5231 MEGGDDFNHHHHHHHHHHRNFPFQLLEKKEDQDPSSCSTSSPYPSLAISAEPSTSNSTRSNNNINLLPTPSEPSPKKPPAKRTSTKDRHTKVDGRGRRIRMPALCAARVFQLTRELGHKSDGETIEWLLQQAEPAVIAATGTGTIPANFTSLNISLRSSGSSMSVPSQLRSNYYNSNFSLQPRRSLFLENTNTSTTLLNFQSNNPISTSVFQPKHELRDSSSLDLSSENNEEGLGRKRRPSEQDLSSAMQHQVGSYLMQSSTSGTIPASHAQISANIWMVANSNSQGVSGEAPLWTFPGVSKSALYRGNMSSGLHFMNFPTPMALLPGQELGSSGIGGNINDGHLSMLSGLNPYRAMIGVSESQASESHSHHGGSEDQHDDN 382
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst9g02350 382 MobiDBLite consensus disorder prediction 208 250 - -
Spst9g02350 382 ProSiteProfiles TCP domain profile. 85 139 IPR017887 -
Spst9g02350 382 MobiDBLite consensus disorder prediction 35 70 - -
Spst9g02350 382 MobiDBLite consensus disorder prediction 1 97 - -
Spst9g02350 382 MobiDBLite consensus disorder prediction 230 244 - -
Spst9g02350 382 Pfam TCP family transcription factor 83 248 IPR017887 -
Spst9g02350 382 MobiDBLite consensus disorder prediction 362 382 - -
Spst9g02350 382 MobiDBLite consensus disorder prediction 79 97 - -
Spst9g02350 382 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 26 379 IPR005333 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst9g02350 Spst-Chr9 55537432 55538580 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst9g02350 76 380 TCP Transcription Factor Family AT3G47620 42.250 1.86e-62 206
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Spst9g02350 TCP 4.3e-40 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst9g02350 - - gmx:100809154 518.464
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst3g04688 3 98685234 98686433 Spst9g02350 9 55537432 55538580 ECH
Spst9g02350 9 55537432 55538580 Spst9g02350 9 55537432 55538580 ECH