Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst9g02342 ATGGGAAGACCACCTTGCTGTGACAAAATTGGGATTAAGAAAGGGCCTTGGACTCCTGAGGAAGACATCATCTTGGTCTCTTACATTCAAGAGCATGGTCCAGGGAATTGGAGATCGGTTCCCACTAATACAGGGTTGATGAGATGCAGCAAAAGCTGCAGACTCAGATGGACCAACTATCTGCGACCTGGAATCAAACGAGGCAATTTCACCGATCATGAAGAGAAAATGATAATCCACCTCCAAGCACTTTTGGGCAACAGATGGGCTGCGATAGCCTCCTACCTTCCACAGAGGACAGACAATGACATAAAAAACTACTGGAATACCCATTTGAAGAAGAAGCTGAAGAAGATGGAAAGTGAGGGTGGTGATGACAGTAACAATTATGAAAAGGGAAACTCTTGTTCACAGCTAAAGGGTCAGTGGGAGAGAAGGCTTCAAACAGATATCCACATGGCCAAACAGGCCTTATGTGAAGCTTTGTCCCTTGACAAACCAACCCAAATTTTCCCTGAGACCAAATTACCCTCCACTTCTTCCCAATGTTTCCATGATCACCACCACCCTACATCACCAAACCAAACATCCTTGTACGCCTCAAGCACAGAAAACATCGCCAAGTTGCTGGACAATTGGATGAAGAAATCCCCAAACAAAATCGAAAAAAACTACTCCTTCAGCAACATGGTAACCACAGGGTCTAGCTCCAGTGAAGGAACACAAAGCACCACCACATGCACACAGGAACATGCTCTTGACTCCTTGTGGAGCTTCAACTCTGAACGTTCACAATCTGTGTCAGCAGAAGAAAACACCAACTTGGTCGAGAGCAAGCCGAACCTAGAGACGCAAGTCCCTCTCATGTTGCTGGAGAATTGGCTCTTCGATGATGCTGCTCCTCAGTGCAACGAAGATCTAATGAACATGTCACTAGAGGAAAGTACGGAAGGGTTGTTCTAG 963 0.459 MGRPPCCDKIGIKKGPWTPEEDIILVSYIQEHGPGNWRSVPTNTGLMRCSKSCRLRWTNYLRPGIKRGNFTDHEEKMIIHLQALLGNRWAAIASYLPQRTDNDIKNYWNTHLKKKLKKMESEGGDDSNNYEKGNSCSQLKGQWERRLQTDIHMAKQALCEALSLDKPTQIFPETKLPSTSSQCFHDHHHPTSPNQTSLYASSTENIAKLLDNWMKKSPNKIEKNYSFSNMVTTGSSSSEGTQSTTTCTQEHALDSLWSFNSERSQSVSAEENTNLVESKPNLETQVPLMLLENWLFDDAAPQCNEDLMNMSLEESTEGLF 320
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst9g02342 320 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Spst9g02342 320 CDD SANT 69 112 IPR001005 -
Spst9g02342 320 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 246 - -
Spst9g02342 320 CDD SANT 16 61 IPR001005 -
Spst9g02342 320 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Spst9g02342 320 FunFam Transcription factor MYB30 68 126 - -
Spst9g02342 320 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Spst9g02342 320 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Spst9g02342 320 FunFam MYB-related transcription factor 13 66 - -
Spst9g02342 320 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 66 116 IPR017930 -
Spst9g02342 320 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Spst9g02342 320 Gene3D - 68 140 - -
Spst9g02342 320 Gene3D - 13 66 - -
Spst9g02342 320 SMART sant 13 63 IPR001005 -
Spst9g02342 320 SMART sant 66 114 IPR001005 -
Spst9g02342 320 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 65 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst9g02342 Spst-Chr9 55100821 55102195 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst9g02342 1 320 MYB Transcription Factor Family AT5G62470 51.233 3.05e-113 330
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Spst9g02342 Myb_DNA-binding 9.7e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst9g02342 K09422 - gmx:100807020 554.673