Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst9g02340 ATGAAACAATTGCAGGTAACCGAAAAGCTTCCTTCAGATATATATGGGGTGAGAGACTCTGCCCCTGTAGCTGAGAAGGTCAACATGTCACAGGATATATCAAGAAAGAGGTCTTGTCCCAGTAAAAGGAAACAATGGAAAGTCCCCACGAGAGTTCGAAAGGCTGAAAGAGAGAAAGAAAAGCGTGAACACATGAATGAACTCTTTCTTGATCTTGCGGATGCACTTGAGGTAACAGACATTAGTGAACAGAGCAATGGAAAAGCTTCTATATTGAGGGAAGCCACCAGATTGCTGAAAGACTTTCAGATCGAGTCCTTGATAAAGGATAGTATATCTCTGTTGTCTGAGACTCACTATGTGACTAAGGAGAAAATTGAGGTGGAAGAGGAGAATTGTGTTCTGCAAACTCAAATTGAGAAACTTGAAGGTGAGATAAAAGCAAGAGTAGCCCACTGTAGACCTAGCCTGATCAATGTACCTTCTCATTTGGAATTTCCACAACCAAAAATGGCTACAAAGTTTCCAGCAGAGAGTCTCCAATTGTCTACCACAGAACCTACACTGCAGCAAGGACATGCAGTTTTGGTTGTCCCCTTAAGTCATCATCATGACCAAGGTACTTTATCAGCTCATAATGTTGCTGAGCTGACCCCAAAACCCACCTCCACGATCAGTAAACCACATGCTAGGTATCCCACCCCAATGGATTCATGGCCACGTCAGTTGCTTGCAGGGAAACCAACTTCAAATTAA 756 0.4299 MKQLQVTEKLPSDIYGVRDSAPVAEKVNMSQDISRKRSCPSKRKQWKVPTRVRKAEREKEKREHMNELFLDLADALEVTDISEQSNGKASILREATRLLKDFQIESLIKDSISLLSETHYVTKEKIEVEEENCVLQTQIEKLEGEIKARVAHCRPSLINVPSHLEFPQPKMATKFPAESLQLSTTEPTLQQGHAVLVVPLSHHHDQGTLSAHNVAELTPKPTSTISKPHARYPTPMDSWPRQLLAGKPTSN 251
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst9g02340 251 Pfam Helix-loop-helix DNA-binding domain 51 103 IPR011598 GO:0046983
Spst9g02340 251 MobiDBLite consensus disorder prediction 27 47 - -
Spst9g02340 251 PANTHER TRANSCRIPTION FACTOR BHLH47 20 249 - -
Spst9g02340 251 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 49 102 IPR011598 GO:0046983
Spst9g02340 251 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 40 103 IPR036638 GO:0046983
Spst9g02340 251 MobiDBLite consensus disorder prediction 219 251 - -
Spst9g02340 251 Gene3D - 49 152 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst9g02340 Spst-Chr9 55002614 55011632 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst9g02340 44 245 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G47640 42.793 5.89e-40 136
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Spst9g02340 HLH 1.9e-05 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst9g02340 - - gmx:100782436 231.876