Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst9g02329 ATGTCGAGCAGGAGGTCACGGTCACGGCAAACAAGTAGTTCAAGGAGTATCACCGATGATCAGATCAATGATCTTGTCTCCAAGTTGCAACAGCTTCTCCCAGAGATTCGCGATAGGCGCTCTGACAAGGTTTCAGCTTCGAAGGTGTTGCAAGAGACATGCAACTATATTAGAAGCTTACACAGGGAAGTGGACGATCTAAGCGAGCGTTTGTCTGAGCTCTTGGCTACAACTGACACTGCACAAGCTGCAATAATTAGAAATTTACTTATGCAATAG 279 0.4552 MSSRRSRSRQTSSSRSITDDQINDLVSKLQQLLPEIRDRRSDKVSASKVLQETCNYIRSLHREVDDLSERLSELLATTDTAQAAIIRNLLMQ 92
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst9g02329 92 CDD bHLH_AtPRE_like 17 77 - -
Spst9g02329 92 MobiDBLite consensus disorder prediction 1 20 - -
Spst9g02329 92 Gene3D - 19 88 IPR036638 GO:0046983
Spst9g02329 92 Pfam Helix-loop-helix DNA-binding domain 20 61 IPR011598 GO:0046983
Spst9g02329 92 Coils Coil 57 77 - -
Spst9g02329 92 PANTHER TRANSCRIPTION FACTOR PRE 1 91 IPR044293 GO:0006355|GO:0040008|GO:0046983
Spst9g02329 92 FunFam Transcription factor ILI6 7 87 - -
Spst9g02329 92 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 20 78 IPR036638 GO:0046983
Spst9g02329 92 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 6 60 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst9g02329 Spst-Chr9 54645004 54646078 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst9g02329 1 92 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G47710 72.043 1.22e-39 125
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Spst9g02329 HLH 6.2e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst9g02329 - - gmx:100527636 157.532
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst1g01316 1 16128376 16129921 Spst9g02329 9 54645004 54646078 ECH
Spst3g02436 3 69314999 69315853 Spst9g02329 9 54645004 54646078 ECH
Spst9g02329 9 54645004 54646078 Spst9g02329 9 54645004 54646078 ECH