Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst9g02327 ATGGCAAATGGAAACTCGGCTGCGAGCTTCTGGACTCAGGCAAACGCACTCCTTAGGAAGAATCTAACCTTTCAGAAGCGAAATGTTAAAACAAACGTTCGACTCATCATGTTTCCGTTCCTGTTGTGTCTGTTGCTGGTTCTGCTCCAACGCCTGGTAGACAGTCAATTGGACAAGGCTGAGAACAAGTGTGGCTGCGTTTGTGTCAGGACACAAGGGGACACGTGTCTGGAGGAGAAGTGCGGGCTTGAGTATTCGGATTTGGACCAGGTTGCCACGTGCCCTGTTCCCAATCCTGTGGAATGGCCTCCTCTGTTGCAGGTGCCGGCCCCACGATACCGAGCTGTGAGAACGGAGAATTTTCCCTTTTCGGGTTATCCAGACGCATCCTGCAGGACGAATGCCTCTTGCCCTGTCACTATGCTCTTCACTGGCGCAAATCAGTCTTTTGGAGAAATTATATCTGGGAATATGATCCCAAGTTCCTTCATTCCTATAAACAACTCTGCTGCTATGGCTAGTTTGGCAGCAAACGTCGCTGGATCATCCTCGATGACAGAGGACACCAACTTTCTGGAACCTGCTTTCTTTTCGGATCTTCCTATTTATTATCTGCAAAGTCAGTGTACGCAGAACTCTACATTTTCCATTTCTTTTGAGCTATCAGCAGCAATTAGCAGGTCACAAGAGTTAGTATGCGCTGAGGGTTTACTTTTATGGCGTAATAGTGCTTCTGAAGTGAACAATGAGCTATATAAAGGCTATCGGAAAAGTAACCCAGAGGAACAGATCGAAGAGATAGCTGCAGGTTATGATTTTTTAAATTCAAATAGGAGAATATTTAATGTCAGCATATGGTACAACTCGACCTACAAAAACGACACTGGCTCTACTCAAATTGCATTGGCCCGTATTCCTCGTTCTGTAAATTTGGTATCAAATGCCTACCTTCAGTTTCTGTTGGGACCAGGTACCAAAATGTTTTTTGAGTTTGTAAAGGAGATGCCAAAACCTTCAACCCCAATTAAATTTGATTTGGCTTCTCTGTTGGGTGCTCTCTTCTTTACATGGGTCATCCTGCAACTTTTCCCTATTGCCTTGACATCGCTGGTATATGAGAAGCAACAAAAGTTAAGAATCATGATGAAAATGCATGGTCTTGGTGATGGGCCATATTGGATGATTTCCTATGGTTATTTTCTTGCCATATCCATAGTCTACATGCTGTGTTTTGTGATATTTGGCTCACTCATTGGGTTGAATTTCTTCACAATGAACGATTACAGCATTCAATTCGTGTTTTATTTCATCTATATAAATTTACAAATTGCACTGGCTTTTTTATTGGCTTCGGTGTTTTCAAATGTTAAAACTGCTACAGTACTTGCATATATAGGTGTGTTTGGAACTGGGCTATTAGCTGGTTCTCTCTTCCAATTTTTTGTTCAAGACACATCATTTCCTAGAGGGTGGATCGTTGTTATGGAGTTGTATCCTGGGTTTGCTTTATATCGTGGGTTATATGAGTTTTCACAATACTCCTTTAGTGGGGATGCTTTGGGGACCAATGGTATGCGCTGGGGCGATTTGAGTGATAGCACAAATGGCATGAAGGAGGTCTTAATTATCATGTTCGTGGAGTGGCTATTGGTGCTTGTCTTTGCTTATTATATCGATCAAGTTTTGTCATCTGGAAGCAGGAAAAGTCCTCTTTTTTTCTTGAAAGGATTTCAGAAAAAGCCTCATTCGTCTTTTCGGAAGCCTAGTATCCAAAGGCAGAAATCTAAGGTTTTTGTTGAGATGGAGAAACCTGATGTCACTCAAGAGAGGGAGAAGGTGGAGCAACTGCTACTTGAACCGACCATTAATCAAGCAATTGTATGCGACGACCTGAGAAAGGTCTACCCGGGGAGGGATGGTAACCCTGAGAAACTCGCAGTGAGAGGTTTGTCCCTTGCTTTGCCTCAAGGAGAATGCTTTGGTATGCTTGGTCCCAATGGTGCTGGGAAGACTTCTTTTATCAATATGATGATTGGTCTCACGAAGCCAACCTCTGGCAGAGCATTTGTTCAAGGTCTTGACATAAGAACTCATATGGATGGAATTTATACAAGCATGGGTGTATGCCCACAACATGACTTGCTGTGGGAATCCCTGACAGGAAGAGAGCATCTATTCTTTTATGGCAGACTTAAAAATCTTAAAGGTTCAGCCTTGACGGAAGCAGTAGAAGAATCGTTGAAAAGTGTAAACCTTTTTTATGGAGGAGTTGCAGATAAACAAGCTGGAAAATACAGCGGAGGAATGAAAAGGAGGCTTAGTGTCGCAATTTCATTGATTGGAGATCCTAAGGTTGTTTATATGGATGAGCCAAGTACTGGACTAGACCCTGCATCAAGAAACAACTTATGGAATGTTGTCAAGCGTGCAAAACAAGATCGTGCAATCATTCTTACCACACATTCCATGGAAGAGGCAGAAGTCCTGTGCGATCGATTAGGAATATTTGTAGATGGTGGCTTGCAGTGCATAGGAAACCCAAAGGAGTTGAAAGGTAGATATGGAGGAACTTATGTCTTCACAATGACAACATCTATGGATCATGAAAAGGATGTAGAGAATTTGGTGCGAGGGCTTTCCCCAAATGCTAACAAGATCTACCATATCTCTGGTACTCAAAAGTTTGAGCTACCAAAGGACGAGATTAAAATAGCAAATGTATTCCAAGCTGTTGAAACTGCTAAGAGAAGCTTCACTGTTTCAGCATGGGGTTTAGCTGATACAACATTGGAAGATGTCTTCGTTAAAGTTGCACGTGGGGCTCAGGCATTTGACACCTTGTCATAG 2847 0.4264 MANGNSAASFWTQANALLRKNLTFQKRNVKTNVRLIMFPFLLCLLLVLLQRLVDSQLDKAENKCGCVCVRTQGDTCLEEKCGLEYSDLDQVATCPVPNPVEWPPLLQVPAPRYRAVRTENFPFSGYPDASCRTNASCPVTMLFTGANQSFGEIISGNMIPSSFIPINNSAAMASLAANVAGSSSMTEDTNFLEPAFFSDLPIYYLQSQCTQNSTFSISFELSAAISRSQELVCAEGLLLWRNSASEVNNELYKGYRKSNPEEQIEEIAAGYDFLNSNRRIFNVSIWYNSTYKNDTGSTQIALARIPRSVNLVSNAYLQFLLGPGTKMFFEFVKEMPKPSTPIKFDLASLLGALFFTWVILQLFPIALTSLVYEKQQKLRIMMKMHGLGDGPYWMISYGYFLAISIVYMLCFVIFGSLIGLNFFTMNDYSIQFVFYFIYINLQIALAFLLASVFSNVKTATVLAYIGVFGTGLLAGSLFQFFVQDTSFPRGWIVVMELYPGFALYRGLYEFSQYSFSGDALGTNGMRWGDLSDSTNGMKEVLIIMFVEWLLVLVFAYYIDQVLSSGSRKSPLFFLKGFQKKPHSSFRKPSIQRQKSKVFVEMEKPDVTQEREKVEQLLLEPTINQAIVCDDLRKVYPGRDGNPEKLAVRGLSLALPQGECFGMLGPNGAGKTSFINMMIGLTKPTSGRAFVQGLDIRTHMDGIYTSMGVCPQHDLLWESLTGREHLFFYGRLKNLKGSALTEAVEESLKSVNLFYGGVADKQAGKYSGGMKRRLSVAISLIGDPKVVYMDEPSTGLDPASRNNLWNVVKRAKQDRAIILTTHSMEEAEVLCDRLGIFVDGGLQCIGNPKELKGRYGGTYVFTMTTSMDHEKDVENLVRGLSPNANKIYHISGTQKFELPKDEIKIANVFQAVETAKRSFTVSAWGLADTTLEDVFVKVARGAQAFDTLS 948
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst9g02327 948 PANTHER ATP-BINDING CASSETTE TRANSPORTER SUBFAMILY A ABCA 593 942 IPR026082 GO:0016020|GO:0055085|GO:0140359
Spst9g02327 948 FunFam ABC transporter A family member 7 615 891 - -
Spst9g02327 948 Pfam ABC-2 family transporter protein 281 557 IPR013525 GO:0016020|GO:0140359
Spst9g02327 948 SMART AAA_5 656 840 IPR003593 GO:0016887
Spst9g02327 948 Pfam ABC transporter 648 792 IPR003439 GO:0005524
Spst9g02327 948 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 614 866 IPR027417 -
Spst9g02327 948 CDD ABC_subfamily_A 630 851 - -
Spst9g02327 948 ProSitePatterns ABC transporters family signature. 765 779 IPR017871 GO:0005524|GO:0016887
Spst9g02327 948 Gene3D - 618 885 IPR027417 -
Spst9g02327 948 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 626 863 IPR003439 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst9g02327 Spst-Chr9 54612358 54620207 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst9g02327 635 874 Calmodulin-binding Proteins AT2G36910 22.619 7.51e-12 67.8
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst9g02327 9 54612358 54620207 Spst9g02327 9 54612358 54620207 ECH