Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst9g02325 ATGGGGAAATCACCAGGAAAATGGATTAAAACTGTACTATTTGGGAAAAAGTCGTCCAAATCAAATAATCCGAAGGGAAGAGAGAAGGTTGTTAATAAAAGAGAAGCAGTGGTTGCTTCCGATGTGTTGGAAAATGGTTTGGCCTTAGAACCAAACCACAATGAGATTGTTACAAATGAGGAGGACCTTGAACTGGAGAATGAAGAATCAGAAATTATTTTACCTGAGAATCAAGAAAGAGAAAATATGGGATCGGTTGATGCAGATGCACCACCTGATCCAGAGAAAATCAGGCAGGAGGTAGCAGCAATAAAGGCACAAGCCGCTTTCAGGGGTTACTTGGCTCGCAGGGCATTTAGAGCTCTAAAAGGCATAATAAGGTTGCAAGCACTTATTCGTGGGCACTTGGTGAGGAGACAAGCTATTGTTACATTATGCTGTATGTATGGGATTGTAAAGTTTCAAGCACTTTCCCGGGGAGGAAGGATTAGACAGTCTAATGTTGGATTTGAAATCCATGAGAAGTGCAGTCTTTTTAAGCCTCTGGAGGGCAAACTTGGTGAGCCAGTTGTTATTTCCACAAAAATTTCAAAGTTGTCTCCAAATACTTTCATCCGTAAGCTTCTTGCTTCATCAATTACGATAATGGCCCTGCGCTTGCAATATGTTAGTGGAGATCCAAATTCAGTCTTAAGCTGGTTGGAGCGCTGGTCAGCATCTTACTTTTGGAAACCAGTTCCCCAACCTAAGAAAATTCGAGACTTAAAATCTCAGAAAAAGCAGGGTAATATTTCAAACGGAGAAGTTCAAATTTCCAAGTCAAGACGCACTAACAGGAAGCTTCCTATTGCAAGTCTTGAACCAGTCCTAGTGCAAACAAATCCTGAATTTGAGAAACCAAAACGTAATTTCAGGAAAACACCATACCAAGTGTCAGATCCAGAGCAAGAAAATCCACAAAGTGAGCTTGAAAAGGTTAAACGTAACTTGAGAAAGATTCATAACCCTGTTGTTGAGAATGCTGTTCAGCCAGAAGTTGAATGTGAGACTCCAAAGCAGCATTTAGAAATTGCAACAGTTATTCCAGGTCATGCTGTTACTGAACAACCGATAATTACTTCTGATGAAAAGATCAAGAAAGAAGAAACTCTGACCATCTCCAATGTGCCTGATGTCGAAATTACTCGAAGACCATCAGTTAATAAGGAAGTGTCTGACATTCCAAACAGTTATGAAGTGTCTGTAGAATCTAAACTCTTGTCAGAGACCACAACTAAAGATAGAACGACTTCGCACGATGAAGTTAAAAATGAGCTAGGCAATCTGTCAGAGGCTATTTTTAAGGAAGAGAAATCCCTATTAACAAATGGAGATTTGAGTCATAAAGATTTGACAGTTAATGAAAACCAGAAACCTACCCGGAAAGCTACGAATTTGACAAAACAAGAGAATGGAGAAGATGACTTAAAGAATAGTCCAAAGGTACCAAGTTATATGGCAGCAACTGAATCGGCCAAGGCAAAGTTGAGGGCACAAGGGTCTCCAAGGTTTGAGCAAGATGGAATTGAGAAAAACAACACTGCTGGTTCTGGGAGACATTCTCTGCCATCTTTAACTAACAACAAGATTAGTTCGCATTCACCTAGAACACAGAGATCAGTTCAAGCAGGTGGCAAAGGGGGCAACAAAAGTGACAGATCAATGCCATCTTCTAAAGGAGGAAATGGGAAAGTAATTCAAGCAGAGTGGAGGAGGTGA 1758 0.405 MGKSPGKWIKTVLFGKKSSKSNNPKGREKVVNKREAVVASDVLENGLALEPNHNEIVTNEEDLELENEESEIILPENQERENMGSVDADAPPDPEKIRQEVAAIKAQAAFRGYLARRAFRALKGIIRLQALIRGHLVRRQAIVTLCCMYGIVKFQALSRGGRIRQSNVGFEIHEKCSLFKPLEGKLGEPVVISTKISKLSPNTFIRKLLASSITIMALRLQYVSGDPNSVLSWLERWSASYFWKPVPQPKKIRDLKSQKKQGNISNGEVQISKSRRTNRKLPIASLEPVLVQTNPEFEKPKRNFRKTPYQVSDPEQENPQSELEKVKRNLRKIHNPVVENAVQPEVECETPKQHLEIATVIPGHAVTEQPIITSDEKIKKEETLTISNVPDVEITRRPSVNKEVSDIPNSYEVSVESKLLSETTTKDRTTSHDEVKNELGNLSEAIFKEEKSLLTNGDLSHKDLTVNENQKPTRKATNLTKQENGEDDLKNSPKVPSYMAATESAKAKLRAQGSPRFEQDGIEKNNTAGSGRHSLPSLTNNKISSHSPRTQRSVQAGGKGGNKSDRSMPSSKGGNGKVIQAEWRR 585
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst9g02325 585 SMART iq_5 98 120 IPR000048 GO:0005515
Spst9g02325 585 SMART iq_5 121 142 IPR000048 GO:0005515
Spst9g02325 585 Pfam IQ calmodulin-binding motif 102 120 IPR000048 GO:0005515
Spst9g02325 585 Pfam IQ calmodulin-binding motif 123 140 IPR000048 GO:0005515
Spst9g02325 585 Gene3D - 98 145 - -
Spst9g02325 585 MobiDBLite consensus disorder prediction 259 277 - -
Spst9g02325 585 ProSiteProfiles IQ motif profile. 99 127 IPR000048 GO:0005515
Spst9g02325 585 PANTHER IQ-DOMAIN 5-RELATED 1 544 - -
Spst9g02325 585 MobiDBLite consensus disorder prediction 519 574 - -
Spst9g02325 585 ProSiteProfiles IQ motif profile. 123 145 IPR000048 GO:0005515
Spst9g02325 585 MobiDBLite consensus disorder prediction 254 277 - -
Spst9g02325 585 MobiDBLite consensus disorder prediction 458 585 - -
Spst9g02325 585 MobiDBLite consensus disorder prediction 300 321 - -
Spst9g02325 585 Pfam Protein of unknown function (DUF4005) 482 564 IPR025064 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst9g02325 Spst-Chr9 54566902 54574271 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst9g02325 1 585 IQD Protein Family AT1G74690 43.719 3.63e-124 376
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst9g02325 - - gmx:100786022 949.503
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst3g04678 3 98580588 98587808 Spst9g02325 9 54566902 54574271 ECH
Spst3g02426 3 68960355 68964228 Spst9g02325 9 54566902 54574271 ECH
Spst2g01565 2 14338581 14342281 Spst9g02325 9 54566902 54574271 ECH
Spst9g02325 9 54566902 54574271 Spst9g02325 9 54566902 54574271 ECH