Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst9g02322 ATGGAAGCAAGGGAAGCTGCAAAGAGGGCTTACAACCCAAACCCCATGAAAGTTACAGCTGAATTCAATGCACACGTAATGAGGGCGTTGAAAGGGTCCAACAGCACGAGAAGGGGCTTGAAGAAAGACGATGGTTCATGCGAGGCGACAAACCCCATTGACAAATGTTGGAGATGCGATAAAAACTGGGAGAAAAACCGGAAGAAGCTAGCAGATTGTGCTCTTGGGTTTGGCCACGGTACAACGGGCGGCAAAGATGGGAAAATCTACGTGGTAGACGACCCTTCCGACAACGACCTTGTGAACCCTAAAAAAGGGACATTGAGACATGCAGCGATTCAGGCAGAGCCACTGTGGATAACTTTTGCCCGAAACATGAACATTGTACTGAAGGCAGAGCTTCTTCTAACGGATAACAAGACGATCGATTCACGTGGTGCCAATGTGCACATTCAAAAAGGTGGTCAAATAACAATGCAATATGTGAAAAACATCATCATTCACGGATTGCACATCCACGACATTAAGAGACGTAGAGGTGGCCTTATACGAGACTCCATGAGCCACTATGGAAATCGCGACATTAGTGATGGCGATGGGCTTTCACTGTTTGGAGCCACAAATGTTTGGATTGATCATGTTTCCATGAGCAATTGCTCAGATGGCCTCATCGATGTCGTTAGTGCATCAACCGCTGTTACCATCTCCAACTGCCATTTTGTCCAACACAACGACGTTTTGTTATTCGGTGCCACTAATACCTTCTCAGGAGATAAAATCATGCAAGTAACTTTGGCTTTCAACCACTTCGGAAAAGGATTGGTTCAGAGAATGCCAAGGTGCAGATGGGGCTTCTTTCACATTGTTAACAATGATTACACTCGTTGGCTAATGTACGCCATAGGTGGCAGCCAGCATCCCACCATCATCAGCCAGGGAAACCGTTTTGTCGCCCCAGATGACCGAAATGCAAAAGAAGTGACAAAAAGGGTACACGCACCTGAAAGTGAGTGGAAGAATTGGAATTGGAGATCAGAGGGTGACATATTGGTGAATGGAGCCTTGTTTGTTGAGTCTGGGAAAAAGGTTAAAGGTCTCAGGACAGACATTAAAGCACAGCCTGGGAAATCCGTAACTAGGCTCACTAAATCTGCAGGATTTCAATATATGCTGTTTGATAATGATAAGTCGTAA 1194 0.4556 MEAREAAKRAYNPNPMKVTAEFNAHVMRALKGSNSTRRGLKKDDGSCEATNPIDKCWRCDKNWEKNRKKLADCALGFGHGTTGGKDGKIYVVDDPSDNDLVNPKKGTLRHAAIQAEPLWITFARNMNIVLKAELLLTDNKTIDSRGANVHIQKGGQITMQYVKNIIIHGLHIHDIKRRRGGLIRDSMSHYGNRDISDGDGLSLFGATNVWIDHVSMSNCSDGLIDVVSASTAVTISNCHFVQHNDVLLFGATNTFSGDKIMQVTLAFNHFGKGLVQRMPRCRWGFFHIVNNDYTRWLMYAIGGSQHPTIISQGNRFVAPDDRNAKEVTKRVHAPESEWKNWNWRSEGDILVNGALFVESGKKVKGLRTDIKAQPGKSVTRLTKSAGFQYMLFDNDKS 397
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst9g02322 397 Pfam Pectate lyase, N terminus 2 40 IPR007524 GO:0030570
Spst9g02322 397 Gene3D - 50 388 IPR012334 -
Spst9g02322 397 SMART amb_all 125 322 IPR002022 -
Spst9g02322 397 PRINTS Pollen allergen Amb family signature 133 149 IPR018082 -
Spst9g02322 397 PRINTS Pollen allergen Amb family signature 299 318 IPR018082 -
Spst9g02322 397 PRINTS Pollen allergen Amb family signature 73 90 IPR018082 -
Spst9g02322 397 PRINTS Pollen allergen Amb family signature 341 365 IPR018082 -
Spst9g02322 397 PRINTS Pollen allergen Amb family signature 97 122 IPR018082 -
Spst9g02322 397 PRINTS Pollen allergen Amb family signature 277 296 IPR018082 -
Spst9g02322 397 PRINTS Pollen allergen Amb family signature 197 218 IPR018082 -
Spst9g02322 397 Pfam Pectate lyase 139 316 IPR002022 -
Spst9g02322 397 SUPERFAMILY Pectin lyase-like 51 364 IPR011050 -
Spst9g02322 397 PANTHER PECTATE LYASE 18-RELATED 5 387 IPR045032 GO:0030570
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst9g02322 Spst-Chr9 54446571 54450029 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst9g02322 10 386 Polysaccharide Lyase AT2G02720 57.538 2.76e-165 469
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst9g02322 K01728 - gmx:100801864 644.81
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst1g01296 1 15695984 15698052 Spst9g02322 9 54446571 54450029 ECH
Spst9g02322 9 54446571 54450029 Spst9g02322 9 54446571 54450029 ECH