Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst9g02316 ATGGCGGGTGGGACTGTCTTTTCCGCTGCTTCCAATCTAACCACTTTGCTTCCCAACCAAACACCACCTTCCACCTCTCAGCCTCTCGATTCTCTTTTCCAATCTTCGTCTTCCTCTTTTCTGGGTTCAAGATCTATATTGAGCTTTGGAGATGTTCAAGGGGGGAAGGGGTGCAACGAGTCGCTCTTCCTATCCTATGATGAGAATGGGGATGAGGACATGGACGAGTACTTTTATCAGCCTGAGAAAAAACGCAGGCTTTCCGTGGAGCAAGTGCAGTTTCTTGAGAAGAGCTTTGATGAGGAGAATAAGCTCGAACCCGAGAGGAAGATTCGGCTAGCTAAGGAACTCGGGTTGCAGCCGCGGCAGGTGGCGATTTGGTTTCAGAACCGCCGGGCGCGGTGGAAGACCAAGCAGATGGAGAAGGATTATGATTCCCTGCAGGCTTGCTATAATGACCTCAAGGCCAACTATGATGATCTTCTCAGGGAAAAGGATAAACTCAAAGCTGAGGTAGCAAGGCTCACTGAAAAGGTGCTTGGAAGAGAGAAACCCGAGGAGGGGAACTTTGAACAGGCTGAAACCAAGGGATTGCAGGAGCCGCTGCAGAAGTCAATGATTGATTCAGCTTCTGAGGGTGAAGGATCCAAAGTGTCCATTGGGGCTTGTAAACAGGAAGACACTAGTTCAGCCAAGAGTGACATGTTTGATTCATCAGAAAGCCCACATTACACTGATGGAGTGCACTCTGCACTCCTTGAGACTGGTGACTCTTCTTATGTATTTGAACCTGATCACTCTGATGTGTCTCAGGATGAAGAAGATAACCTGAGAAAGACCCTTTTGCCTCATTACATCTTTCCCAAACTTGAAGATGTTGGTTACTCCGACCCACCACATAGTTCATGCCATTTTGGAATTCCGGAGGAAGATCAAGCCATCTGGTCTTGGTCTTACTGA 960 0.4802 MAGGTVFSAASNLTTLLPNQTPPSTSQPLDSLFQSSSSSFLGSRSILSFGDVQGGKGCNESLFLSYDENGDEDMDEYFYQPEKKRRLSVEQVQFLEKSFDEENKLEPERKIRLAKELGLQPRQVAIWFQNRRARWKTKQMEKDYDSLQACYNDLKANYDDLLREKDKLKAEVARLTEKVLGREKPEEGNFEQAETKGLQEPLQKSMIDSASEGEGSKVSIGACKQEDTSSAKSDMFDSSESPHYTDGVHSALLETGDSSYVFEPDHSDVSQDEEDNLRKTLLPHYIFPKLEDVGYSDPPHSSCHFGIPEEDQAIWSWSY 319
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst9g02316 319 Pfam Homeobox associated leucine zipper 138 179 IPR003106 GO:0006355|GO:0043565
Spst9g02316 319 SMART HOX_1 81 142 IPR001356 GO:0003677
Spst9g02316 319 MobiDBLite consensus disorder prediction 14 36 - -
Spst9g02316 319 ProSiteProfiles 'Homeobox' domain profile. 78 138 IPR001356 GO:0003677
Spst9g02316 319 PRINTS Lambda-repressor HTH signature 118 134 IPR000047 GO:0003677
Spst9g02316 319 PRINTS Lambda-repressor HTH signature 109 118 IPR000047 GO:0003677
Spst9g02316 319 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 61 235 IPR045224 GO:0003700
Spst9g02316 319 CDD homeodomain 83 139 IPR001356 GO:0003677
Spst9g02316 319 SUPERFAMILY Homeodomain-like 73 140 IPR009057 -
Spst9g02316 319 Gene3D - 78 146 - -
Spst9g02316 319 Pfam Homeodomain 83 136 IPR001356 GO:0003677
Spst9g02316 319 Coils Coil 137 178 - -
Spst9g02316 319 ProSitePatterns 'Homeobox' domain signature. 113 136 IPR017970 GO:0000981|GO:0006355
Spst9g02316 319 MobiDBLite consensus disorder prediction 208 247 - -
Spst9g02316 319 MobiDBLite consensus disorder prediction 222 245 - -
Spst9g02316 319 FunFam homeobox-leucine zipper protein ATHB-6-like 86 132 - -
Spst9g02316 319 MobiDBLite consensus disorder prediction 183 202 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst9g02316 Spst-Chr9 54385065 54386807 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst9g02316 81 238 Homeobox Transcription Factor Family AT3G01470 50.000 1.14e-45 154
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Spst9g02316 Homeodomain 1e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst9g02316 - - gmx:732618 527.324
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst3g04659 3 98429966 98431260 Spst9g02316 9 54385065 54386807 ECH
Spst9g02316 9 54385065 54386807 Spst9g02316 9 54385065 54386807 ECH