Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst9g02308 ATGGGCATGGACTACTACAACATACTCAAAGTGAATCGCAACGCCAGCGATGACGATTTGAAGAAAGCGTACAAGCGCCTCGCCCGCATATGGCACCCCGACAAAAACCCCGACAACAAGAGCGAGGCCGAGGCCAAATTCAAGCGAATATCTGAAGCCTATGATGTCCTCAGCGACCCTCAGAAGCGCCAGATCTACGATCTCTACGGCGAGGAGGCTCTCAAATCCGGTCAGTTTCCGCCGCCACCGCACTCCTCCTCCTCCTCCCGCGCCTTCCACCGCCACAACCCCCCCGCCTCCTCCTTCCGCTTCAATCCCCGCGACGCCGCCGACATCTACGCCGAGTTCTTCGGCCCGGACGACGTCGGCTCGTCGCGCCGCGATGCCTTCTTCCGGACCTCAAACGGCGGCCCCGCGTTCGGCGCCTCCGCCCCGAGGAAGGCCGCCCCGGTGGAGAATGCGCTTCCCTGCAGCTTGGAGGACCTCTACAAGGGCGTCAAGAAGAAGATGAAGATCTCCAGGAACGTCTGCGACACTTTTGGCAAAACTCGGAATGTGGAGGAGATTTTGACTATTGAGATAAAACCTGGCTGGAAGAAAGGGACAAAGATTACCTTTCCAGAGAAGGGTAACCAGGAGCCTGGTGTCATTCCAGCAGATATTATTTTTGTGATAGATGAGAAACCGCATGCTCTTTATAGAAGGGATGGTAATGATTTGGTGATCAACCAGGAGATAACCCTTCTCGAGGCCCTTACTGGTAAAACATTGGAACTAATCACCTTAGATGGAAGGAGTCTCGTGATACCATTGACAGATATTGTCAAACCTGGTGCCGAGGTTGTTGTCCCTGATGAAGGAATGCCTATCTCAAAAGAGCCTGGGAGGAAGGGGAATTTGAGAGTTAAGCTTGACGTCAAGTATCCTTCAAGGCTAACTCCAGAGCAGAAGTCTGATCTGAGGAGAGCTTTAGGTGGAATCTCATGA 987 0.535 MGMDYYNILKVNRNASDDDLKKAYKRLARIWHPDKNPDNKSEAEAKFKRISEAYDVLSDPQKRQIYDLYGEEALKSGQFPPPPHSSSSSRAFHRHNPPASSFRFNPRDAADIYAEFFGPDDVGSSRRDAFFRTSNGGPAFGASAPRKAAPVENALPCSLEDLYKGVKKKMKISRNVCDTFGKTRNVEEILTIEIKPGWKKGTKITFPEKGNQEPGVIPADIIFVIDEKPHALYRRDGNDLVINQEITLLEALTGKTLELITLDGRSLVIPLTDIVKPGAEVVVPDEGMPISKEPGRKGNLRVKLDVKYPSRLTPEQKSDLRRALGGIS 328
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst9g02308 328 Gene3D - 230 310 - -
Spst9g02308 328 FunFam DnaJ subfamily B member 13 3 127 - -
Spst9g02308 328 Gene3D DnaJ domain 2 129 IPR036869 -
Spst9g02308 328 CDD DnaJ 4 59 IPR001623 -
Spst9g02308 328 Gene3D - 150 228 - -
Spst9g02308 328 Pfam DnaJ C terminal domain 152 309 IPR002939 -
Spst9g02308 328 MobiDBLite consensus disorder prediction 80 95 - -
Spst9g02308 328 SMART dnaj_3 3 62 IPR001623 -
Spst9g02308 328 SUPERFAMILY HSP40/DnaJ peptide-binding domain 152 230 IPR008971 GO:0006457|GO:0051082
Spst9g02308 328 ProSiteProfiles dnaJ domain profile. 4 70 IPR001623 -
Spst9g02308 328 FunFam DNAJ heat shock family protein 229 324 - -
Spst9g02308 328 Pfam DnaJ domain 4 67 IPR001623 -
Spst9g02308 328 CDD DnaJ_C 155 312 - -
Spst9g02308 328 SUPERFAMILY HSP40/DnaJ peptide-binding domain 233 318 IPR008971 GO:0006457|GO:0051082
Spst9g02308 328 ProSitePatterns Nt-dnaJ domain signature. 47 66 IPR018253 -
Spst9g02308 328 FunFam Dnaj homolog subfamily b member 147 228 - -
Spst9g02308 328 PANTHER DNAJ HOMOLOG SUBFAMILY C MEMBER 3 324 - -
Spst9g02308 328 SUPERFAMILY Chaperone J-domain 3 84 IPR036869 -
Spst9g02308 328 PRINTS DnaJ domain signature 6 24 IPR001623 -
Spst9g02308 328 PRINTS DnaJ domain signature 24 39 IPR001623 -
Spst9g02308 328 PRINTS DnaJ domain signature 42 62 IPR001623 -
Spst9g02308 328 PRINTS DnaJ domain signature 62 81 IPR001623 -
Spst9g02308 328 MobiDBLite consensus disorder prediction 74 104 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst9g02308 Spst-Chr9 54108073 54111296 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst9g02308 5 74 C2H2 Transcription Factor Family AT1G74250 36.486 3.17e-08 53.1