Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst9g02295 ATGGATCCTCCTCTCATCACTGACTCCACATTCTCGCCTGCTTACACCCTCGCCGACATTTGGCTCGGAAGCCCCCCTTTCCCCCCCGCCTCCGCCGATCAATCCGCCTTCACCCACCTCGCCACCGCCTCCTGCAAGAGGAAGGATGCCGTCACCGACGACGACGACGACCACTGCTCCAAGAATGATTCTGGTTGCAATAAAAGGATGAAGTTGGGAGGGTCCAGCGTTGAGAGTGATAGTTTGAAAGGTGAAGGAGAAACGAGTTCTGTGGGTGGTAACAAGTCAAGTGAACAAAGCACTATACCTTGTGAGGCACCTAAGCAAGACTACATTCATGTGAGAGCAAGAAGGGGCCAAGCTACTGATAGCCACAGTCTAGCAGAAAGAGCAAGAAGAGAAAAAATCAGTGAGAGAATGAAAATTCTTCAGGATTTGGTTCCTGGGTGTAACAAGGTAACTGGTAAAGCCCTTGTCCTAGATGAGATAATCAATTACATCCAGTCGCTGCAGCGTCAGGTTGAGTTCCTTTCTATGAAGCTCGAAGCAGTTAATTCAAGGATGAACATGAACCCTAGCATAGATGGATTTCCTTTAAAAGATGATGGTGGTACTCAACGATTCGACATTGCAGGAATGGTTTTTGGATCACAAGCAGCAAGGGGGTATGCTCAGGGATCACATCTTGGATGGCTGCATATGCAGATCGGTGGTGGTTTGAGGGAACAACATGATTAA 738 0.4837 MDPPLITDSTFSPAYTLADIWLGSPPFPPASADQSAFTHLATASCKRKDAVTDDDDDHCSKNDSGCNKRMKLGGSSVESDSLKGEGETSSVGGNKSSEQSTIPCEAPKQDYIHVRARRGQATDSHSLAERARREKISERMKILQDLVPGCNKVTGKALVLDEIINYIQSLQRQVEFLSMKLEAVNSRMNMNPSIDGFPLKDDGGTQRFDIAGMVFGSQAARGYAQGSHLGWLHMQIGGGLREQHD 245
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst9g02295 245 SMART finulus 126 176 IPR011598 GO:0046983
Spst9g02295 245 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 44 218 IPR024097 GO:0006355
Spst9g02295 245 MobiDBLite consensus disorder prediction 70 104 - -
Spst9g02295 245 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 118 190 IPR036638 GO:0046983
Spst9g02295 245 CDD bHLH_AtBPE_like 110 195 - -
Spst9g02295 245 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 120 170 IPR011598 GO:0046983
Spst9g02295 245 MobiDBLite consensus disorder prediction 81 104 - -
Spst9g02295 245 FunFam Basic helix-loop-helix transcription factor 117 190 - -
Spst9g02295 245 Pfam Helix-loop-helix DNA-binding domain 124 171 IPR011598 GO:0046983
Spst9g02295 245 Coils Coil 167 187 - -
Spst9g02295 245 Gene3D - 117 194 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst9g02295 Spst-Chr9 53748956 53751510 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst9g02295 1 240 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G62610 45.965 3.54e-64 199
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Spst9g02295 HLH 1.5e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst9g02295 - - gmx:100777819 357.836
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst9g02295 9 53748956 53751510 Spst9g02295 9 53748956 53751510 ECH