Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst9g02277 ATGTCTACCTCCTCAACCCACCACACCTATAGCCGAAAGCAGAAATCACTCGGCTTATTGTGCACCAATTTTCTGAGGCTATACAACAGAGAAGGCGTTCGCTTAATCGGTCTCGATGACGCCGCTTCGCGATTAGGAGTTGAAAGGCGCCGGATCTACGACATCGTCAACGTCCTAGAGAGCGTCGGGGTGCTGGCCAGAAAAGCTAAGAATCAGTATACCTGGAAAGGCTTTTCTGCAATTCCCGAGGCTTTGCAAGAACTCAAGGAAGATGGTTTGAAGGAGAATCCTGGGTCTTTTGATGACTCCAATGACAGTGCGAAAGTGTCTGATGATGAGGATGAGGAGGAAAGCTCTCCCAATGTCAATGCTGAAAGTCAGAATGACAAGGAAAATCCTGATTCCACCCCTCCTGTCATATCCTCTAAGAATGAAAACAGAAGGGAGAAGTCTCTGGCATTACTTACCCAGAATTTTGTCAAGCTTTTTATCTGCTCTAATATTGAACTGATCTCCCTTGACGATGCTGCAAAGTTGTTGCTTGGAAATGCCCATAATACATCAATAATGAGGACAAAAGTCAGACGCCTATATGATATTGCAAATGTGTTATCCTCCATGAACCTAATCGAGAAGACTCATACAACGAACACTAGAAAACCAGCATTTAGGTGGTTGGGTTGGAGAGGGAAAGCATGGAGTGAATCAGTTGACTTGGCTCACAATTCAGATGTCAAAGAGGCAGGGAAAAGAAAGTTTGGAACTGACATTACAAACACAAGTTTTAAAAGGAGCAAAGCTGATTTGCTCTTGGATAGCCGGGACTGTAAAATGCAAAACCAACATGAAAATATTAGTTACAGAGCACAGACAGTGAAAAGCAATGTAGAAAAGGATGCAAAACAGACTTTAAAGGGATATCAGTTTGGCCCTTTCGCTCCAGCTTATGTGTCCAAAGTCGGAACCTCTGAAAATAATAACGGGAATCAGGTGCATGACTGGGACAGCCTCGCACAGGTTCATCGTCCTCAATATCAAAATCAAGATGTGCACAATTTACATGTTGGTAGGTTGATTCAGTTCCAATACAGAGAATGTGAAGAGCACGGCAGTGAGATGCTTTGGGTAGAGGTCGAATTTGAAGATGTTCGGATTGGGGTTGAGTTGATACATGCTTAG 1179 0.436 MSTSSTHHTYSRKQKSLGLLCTNFLRLYNREGVRLIGLDDAASRLGVERRRIYDIVNVLESVGVLARKAKNQYTWKGFSAIPEALQELKEDGLKENPGSFDDSNDSAKVSDDEDEEESSPNVNAESQNDKENPDSTPPVISSKNENRREKSLALLTQNFVKLFICSNIELISLDDAAKLLLGNAHNTSIMRTKVRRLYDIANVLSSMNLIEKTHTTNTRKPAFRWLGWRGKAWSESVDLAHNSDVKEAGKRKFGTDITNTSFKRSKADLLLDSRDCKMQNQHENISYRAQTVKSNVEKDAKQTLKGYQFGPFAPAYVSKVGTSENNNGNQVHDWDSLAQVHRPQYQNQDVHNLHVGRLIQFQYRECEEHGSEMLWVEVEFEDVRIGVELIHA 392
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst9g02277 392 SUPERFAMILY "Winged helix" DNA-binding domain 149 228 IPR036390 -
Spst9g02277 392 MobiDBLite consensus disorder prediction 93 146 - -
Spst9g02277 392 PANTHER TRANSCRIPTION FACTOR E2F 5 346 IPR015633 GO:0000978|GO:0006357
Spst9g02277 392 Pfam E2F/DP family winged-helix DNA-binding domain 13 77 IPR003316 GO:0005667|GO:0006355
Spst9g02277 392 Pfam E2F/DP family winged-helix DNA-binding domain 149 227 IPR003316 GO:0005667|GO:0006355
Spst9g02277 392 SUPERFAMILY "Winged helix" DNA-binding domain 11 75 IPR036390 -
Spst9g02277 392 FunFam E2F transcription factor 8 7 79 - -
Spst9g02277 392 FunFam E2F transcription factor-like E2FE 142 229 - -
Spst9g02277 392 SMART E2F_TDP_2 12 77 IPR003316 GO:0005667|GO:0006355
Spst9g02277 392 SMART E2F_TDP_2 147 227 IPR003316 GO:0005667|GO:0006355
Spst9g02277 392 Gene3D - 7 79 IPR036388 -
Spst9g02277 392 Gene3D - 141 229 IPR036388 -
Spst9g02277 392 MobiDBLite consensus disorder prediction 121 142 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst9g02277 Spst-Chr9 53399420 53405598 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst9g02277 7 353 E2F-DP Transcription Factor Family AT3G48160 57.910 6.45e-120 352
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF E2F-DP Spst9g02277 E2F_TDP 3.3e-20 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst9g02277 K09391 - gmx:100818090 537.339
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst9g02277 9 53399420 53405598 Spst9g02277 9 53399420 53405598 ECH
Spst3g04617 3 97959493 97962928 Spst9g02277 9 53399420 53405598 PCT