Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst9g02261 ATGGGTGGAAATGGCAAGCACAGGTGGAAAATCTCCTTCCACCGTTCCTCTTCCCAATCCTCCAAGCTGGACCCCAAGCTCCCTCCCAAGGAATTCACATGCCCCATTTCCGGCTCCTTAATGTCCGACCCGGTTGTCGTCGCTTCGGGCCAAACCTTCGAACGCCTCGCCGTTCAAGTCTGCAAGGACCTCGGCTTCTCCCCCAAGCTAGAAGACGGGACCCGACCCGATTTCTCAACAGTAATCCCTAACTTAGCCATCAAAACGACAATCCTCAACTGGTGCGACAAGTCCCACACACAACACCCGCGCGCACCCGATTACAACTCCCTCCAGCGCCACGTCAGACAAGCAATGGCCGCGTCAGGGGAACAAAACGAACAAGGAGAAGACCGAATTAGGGTTTCCGAAAAGGAGCTTCTCAACGCGGTCGCGGATAACCCCCCCGTCATTTTCTCCCACGCCGCCACTGAGTTAGGTCCCCGAGTTAACCACTTTAACTCGGGATCCTCCTCTGAGGAATCGGTCATTATTCCGCCCAGCCCTGGAACGCCGTTACCGTTAACCATTCGTCCAATCTGCTTATCCTCCTCCTCCTCATCCTGCGAGATAGAAATCGAAAACCCTAGCGCGCCGGTAACAGAGGAAGAAGAAAGAATATTGAAGAAACTGAAGAGCAGCGAGGTGTTTGAGCAAGAAGAAGGCGTAATCTCGCTGAGGAAGATCACGAGGAGCAAAGAGGAGGCTAGGGTTTCGTTCTGCACGCCGCGGGTACTTTTGCCGCTGCGCGGTTTGATTGCTTCCCGATACGGCGTCGTACAGGTCAACGCGGTGGCGTCGCTGGTGAACCTCTCGCTGGAAAAGCAGAACAAGGTGAAGATCGTGAGGTCAGGGTTTGTTCCGTTTTTAATCGATGTTTTGAAGGGGGGATTGGGTGAGTCACAAGAGCACGCTGCGGGCGCGCTTTTCAGTTTAGCGTTGGATGATGATAATAAAATGGCGATTGGCGTTCTCGGCGCGTTGCAGCCGCTGATGCACGCGCTGCGTGCCGAGTCCGAGCGGACTCGGCACGACTCGGCGCTTGCTTTGTATCATTTGAGCCTTGTTCAGAGTAACCGAGTGAAGCTGGTGAAACTGGGGGCGGTGCCGACGCTTTTGTCGATGGTGGTGGCGGGGAACTTGGCGAGCCGGGTGCTGCTGATTCTGTGCAACCTGGCTGTGAGCACGGAGGGGCGAACGGCGATGCTGGATGCGAACGCGGTGGAATGTTTGGTGGGGTTTTTGAGGGAAAACGAGTTGGACTCGGAGGCGACGCGGGAAAATTGCGTGGCGGCGCTGTACGCGCTGAGTCATAGGAGCTTGAGGTTCAAAGGGTTGGCAAAGGACGCAAGGGTTGTGGAGGTATTGAAGGAGGTTGAACAAACGGGAACGGAAAGGGCCAGGGAGAAGGCCAGGAAGGTGTTGCACATGTTGAGAACTGTGGGCGATGGAGATGGTGATGAAGGCGAGGAATTTTTTGACTCGGCCGGGTTGATGCGGAATCGATACCGTGTTGGTGCGGCCAGGAACCATAACATCGTCAACACGACCACGTTTTAG 1599 0.5541 MGGNGKHRWKISFHRSSSQSSKLDPKLPPKEFTCPISGSLMSDPVVVASGQTFERLAVQVCKDLGFSPKLEDGTRPDFSTVIPNLAIKTTILNWCDKSHTQHPRAPDYNSLQRHVRQAMAASGEQNEQGEDRIRVSEKELLNAVADNPPVIFSHAATELGPRVNHFNSGSSSEESVIIPPSPGTPLPLTIRPICLSSSSSSCEIEIENPSAPVTEEEERILKKLKSSEVFEQEEGVISLRKITRSKEEARVSFCTPRVLLPLRGLIASRYGVVQVNAVASLVNLSLEKQNKVKIVRSGFVPFLIDVLKGGLGESQEHAAGALFSLALDDDNKMAIGVLGALQPLMHALRAESERTRHDSALALYHLSLVQSNRVKLVKLGAVPTLLSMVVAGNLASRVLLILCNLAVSTEGRTAMLDANAVECLVGFLRENELDSEATRENCVAALYALSHRSLRFKGLAKDARVVEVLKEVEQTGTERAREKARKVLHMLRTVGDGDGDEGEEFFDSAGLMRNRYRVGAARNHNIVNTTTF 532
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst9g02261 532 Pfam Armadillo/beta-catenin-like repeat 328 367 IPR000225 GO:0005515
Spst9g02261 532 ProSiteProfiles U-box domain profile. 27 101 IPR003613 GO:0004842|GO:0016567
Spst9g02261 532 Gene3D - 396 495 IPR011989 -
Spst9g02261 532 Gene3D - 216 395 IPR011989 -
Spst9g02261 532 SMART Ubox_2 31 94 IPR003613 GO:0004842|GO:0016567
Spst9g02261 532 SUPERFAMILY RING/U-box 14 102 - -
Spst9g02261 532 MobiDBLite consensus disorder prediction 1 29 - -
Spst9g02261 532 FunFam RING-type E3 ubiquitin transferase 9 102 - -
Spst9g02261 532 SUPERFAMILY ARM repeat 219 491 IPR016024 -
Spst9g02261 532 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 28 102 IPR013083 -
Spst9g02261 532 PANTHER U BOX DOMAIN-CONTAINING 21 491 - -
Spst9g02261 532 Pfam U-box domain 29 97 IPR003613 GO:0004842|GO:0016567
Spst9g02261 532 SMART arm_5 287 327 IPR000225 GO:0005515
Spst9g02261 532 SMART arm_5 328 368 IPR000225 GO:0005515
Spst9g02261 532 SMART arm_5 408 451 IPR000225 GO:0005515
Spst9g02261 532 FunFam RING-type E3 ubiquitin transferase 215 491 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst9g02261 Spst-Chr9 52625522 52627120 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst9g02261 1 532 U-box Gene Family AT5G65200 57.016 0.0 580
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst9g02261 - - gmx:100784564 875.93
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst4g00117 4 1163796 1165505 Spst9g02261 9 52625522 52627120 ECH
Spst9g02261 9 52625522 52627120 Spst9g02261 9 52625522 52627120 ECH